View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0786_low_14 (Length: 402)

Name: NF0786_low_14
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0786_low_14
NF0786_low_14
[»] chr4 (17 HSPs)
chr4 (150-303)||(38147357-38147517)
chr4 (177-297)||(12639723-12639843)
chr4 (185-297)||(28103806-28103918)
chr4 (184-273)||(917683-917772)
chr4 (177-293)||(43012754-43012870)
chr4 (206-293)||(23643431-23643518)
chr4 (206-271)||(12639208-12639273)
chr4 (177-293)||(54714873-54714989)
chr4 (209-271)||(28104360-28104421)
chr4 (209-271)||(919115-919176)
chr4 (177-271)||(43013130-43013224)
chr4 (177-245)||(12629834-12629902)
chr4 (264-295)||(918651-918682)
chr4 (257-299)||(23037996-23038038)
chr4 (184-245)||(25163430-25163491)
chr4 (238-298)||(8497099-8497159)
chr4 (258-298)||(29864749-29864789)
[»] chr2 (9 HSPs)
chr2 (178-297)||(4329599-4329718)
chr2 (177-297)||(39865300-39865420)
chr2 (177-297)||(29770766-29770886)
chr2 (165-293)||(30674429-30674557)
chr2 (178-293)||(9074598-9074713)
chr2 (180-271)||(4330136-4330226)
chr2 (189-293)||(9914204-9914308)
chr2 (209-271)||(29771299-29771360)
chr2 (177-271)||(39864768-39864860)
[»] chr3 (10 HSPs)
chr3 (16-149)||(45395426-45395560)
chr3 (177-297)||(23566891-23567011)
chr3 (179-293)||(39737730-39737844)
chr3 (180-293)||(785770-785883)
chr3 (206-293)||(30385749-30385836)
chr3 (209-271)||(39737232-39737293)
chr3 (207-293)||(53153855-53153941)
chr3 (179-271)||(23566432-23566522)
chr3 (33-99)||(50470355-50470421)
chr3 (198-271)||(53153517-53153590)
[»] scaffold0064 (1 HSPs)
scaffold0064 (16-150)||(19917-20052)
[»] chr7 (12 HSPs)
chr7 (177-297)||(31166956-31167076)
chr7 (189-295)||(21971546-21971651)
chr7 (198-281)||(27596002-27596084)
chr7 (174-293)||(28750927-28751045)
chr7 (298-387)||(36998070-36998156)
chr7 (178-293)||(38916392-38916507)
chr7 (189-293)||(27230474-27230578)
chr7 (176-291)||(15577468-15577578)
chr7 (178-271)||(21972092-21972184)
chr7 (185-293)||(32741787-32741895)
chr7 (178-271)||(38916045-38916138)
chr7 (238-298)||(21948149-21948209)
[»] chr6 (7 HSPs)
chr6 (16-149)||(17922857-17922991)
chr6 (179-293)||(8700890-8701004)
chr6 (206-293)||(12307301-12307388)
chr6 (206-293)||(7727381-7727468)
chr6 (184-293)||(604984-605096)
chr6 (177-271)||(12306970-12307064)
chr6 (177-271)||(8701263-8701357)
[»] chr8 (8 HSPs)
chr8 (181-297)||(26759207-26759323)
chr8 (186-297)||(146644-146755)
chr8 (174-293)||(308301-308420)
chr8 (185-293)||(186682-186790)
chr8 (177-268)||(187049-187140)
chr8 (209-271)||(147190-147251)
chr8 (239-293)||(25277141-25277195)
chr8 (238-298)||(43724158-43724218)
[»] chr5 (7 HSPs)
chr5 (177-297)||(39121836-39121956)
chr5 (21-149)||(3623465-3623594)
chr5 (185-293)||(14393983-14394091)
chr5 (177-292)||(20983543-20983658)
chr5 (185-293)||(25672272-25672380)
chr5 (180-271)||(20983842-20983933)
chr5 (177-271)||(14394344-14394438)
[»] chr1 (2 HSPs)
chr1 (185-293)||(40888792-40888900)
chr1 (177-245)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 150 - 303
Target Start/End: Original strand, 38147357 - 38147517
Alignment:
Q  150 atttaataatttgggcaatgttaaccag-------gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaatt 242  Q
    |||||||||||||||||||| ||||| |       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38147357 atttaataatttgggcaatgctaaccggtgctttcgggcactggataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaatt 38147456  T
Q  243 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctctgatg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38147457 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatg 38147517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 12639843 - 12639723
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 276  Q
    |||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12639843 ggggtactggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtgtaaaatatgtcaactaattaaaaataat 12639744  T
Q  277 aaaagctatattcaatactct 297  Q
    |||||||||||||||||||||    
T  12639743 aaaagctatattcaatactct 12639723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 28103806 - 28103918
Alignment:
Q  185 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 284  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28103806 ggataaggaacaataaataatcattaaataaatggatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 28103905  T
Q  285 tattcaatactct 297  Q
    |||||||||||||    
T  28103906 tattcaatactct 28103918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 917683 - 917772
Alignment:
Q  184 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 273  Q
    ||||||| ||||| ||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  917683 tggataaagaacaataaatagtcaataaataaatgaatctaagttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 917772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 43012754 - 43012870
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 276  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  43012754 ggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 43012853  T
Q  277 aaaagctatattcaata 293  Q
    ||| | |||||||||||    
T  43012854 aaatgttatattcaata 43012870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 23643431 - 23643518
Alignment:
Q  206 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 293  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||    
T  23643431 caataaataaattgatctcacttcatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatattcaata 23643518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 12639208 - 12639273
Alignment:
Q  206 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||||||||    
T  12639208 caataaataaatggatctcacttaatttacctcaattaatgtgtaaaatatgtcaactaattaaaa 12639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 54714989 - 54714873
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 276  Q
    |||||| ||||||| ||| |  |||||| |||||||||||| ||| |||||| ||| |||| ||||||||||||| |||| | || ||||||||| ||||    
T  54714989 ggggcattggataaagaataaaaaataggcaataaataaatggatttcacttgatttatcttaattaaagtgtaaaatattttaaataattaaaattaat 54714890  T
Q  277 aaaagctatattcaata 293  Q
    ||| | |||||||||||    
T  54714889 aaatgttatattcaata 54714873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 28104421 - 28104360
Alignment:
Q  209 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  28104421 taaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 28104360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 919176 - 919115
Alignment:
Q  209 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  919176 taaataaatgaatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 919115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 43013224 - 43013130
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  43013224 ggggcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 43013130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 12629834 - 12629902
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 245  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| || | ||| | ||||||||||    
T  12629834 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacatgatttacctcaattaaa 12629902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 918651 - 918682
Alignment:
Q  264 aattaaaaataataaaagctatattcaatact 295  Q
    ||||||||||||||||||||||||||||||||    
T  918651 aattaaaaataataaaagctatattcaatact 918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 23038038 - 23037996
Alignment:
Q  257 gtcaactaattaaaaataataaaagctatattcaatactctct 299  Q
    ||||||||||||||| ||||||||| | |||||||||||||||    
T  23038038 gtcaactaattaaaattaataaaagttgtattcaatactctct 23037996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 25163430 - 25163491
Alignment:
Q  184 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 245  Q
    ||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  25163430 tggataaggaacattaaatagacaataaatgaatagatcttactttatttacctcaattaaa 25163491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 8497099 - 8497159
Alignment:
Q  238 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctc 298  Q
    |||||||| ||||| ||| ||||||||||||| | ||||||||  | ||||||||||||||    
T  8497099 caattaaaatgtaaaataggtcaactaattaagattaataaaaattctattcaatactctc 8497159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 29864749 - 29864789
Alignment:
Q  258 tcaactaattaaaaataataaaagctatattcaatactctc 298  Q
    |||||||||||| | |||||||| |||||||||||||||||    
T  29864749 tcaactaattaagattaataaaaactatattcaatactctc 29864789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 4329599 - 4329718
Alignment:
Q  178 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 277  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329599 gggcactggataaggaacagtaaatagttaataaataaatagatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 4329698  T
Q  278 aaagctatattcaatactct 297  Q
    ||||||||||||||||||||    
T  4329699 aaagctatattcaatactct 4329718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 39865420 - 39865300
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 276  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39865420 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 39865321  T
Q  277 aaaagctatattcaatactct 297  Q
    |||||||||||||||||||||    
T  39865320 aaaagctatattcaatactct 39865300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 29770766 - 29770886
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 276  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  29770766 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaagtataatatatgtcaactaattaaaaataat 29770865  T
Q  277 aaaagctatattcaatactct 297  Q
    |||||||||| ||||||||||    
T  29770866 aaaagctataatcaatactct 29770886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 30674557 - 30674429
Alignment:
Q  165 caatgttaaccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaacta 264  Q
    ||||| ||||| ||||||| |||||| ||||| | ||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||    
T  30674557 caatgctaaccgggggcaccggataaagaacaattaataagcaataaataaatagatctcacttgatttatcttaattaaaatgtaaaatatttcaacta 30674458  T
Q  265 attaaaaataataaaagctatattcaata 293  Q
    ||||||| ||||||| | |||||||||||    
T  30674457 attaaaattaataaatgttatattcaata 30674429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 9074598 - 9074713
Alignment:
Q  178 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 277  Q
    |||||| |||||| ||||| ||||||| |||||||||||| ||||||||||  || | || ||||||||||||| |||| |||||||||||||| |||||    
T  9074598 gggcaccggataaagaacaataaatagacaataaataaatggatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 9074697  T
Q  278 aaagctatattcaata 293  Q
    || | |||||||||||    
T  9074698 aatgttatattcaata 9074713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 4330226 - 4330136
Alignment:
Q  180 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    ||||||||||||||||| | ||||  || ||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  4330226 gcactggataaggaacaattaatatgcattaaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatgttaactaattaaaa 4330136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 9914204 - 9914308
Alignment:
Q  189 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 288  Q
    |||||||| |||||||  |||||||||||  ||||||||| ||| |  | ||||||||||||| |||| |||||||| ||||| ||||||| ||||||||    
T  9914204 aaggaacaataaataggtaataaataaatgaatctcacttgatttactttaattaaagtgtaaaatatttcaactaactaaaattaataaatgctatatt 9914303  T
Q  289 caata 293  Q
    |||||    
T  9914304 caata 9914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 29771360 - 29771299
Alignment:
Q  209 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    |||||||||  |||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  29771360 taaataaatgaatctcacttaattcatctcaattata-tgtaaaatatgtcaactaattaaaa 29771299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 39864768 - 39864860
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    ||||||||||||||||| || | ||||  || |||||||||  |||||| |||||||||||||| |||| |||||  |||||||| |||||||||    
T  39864768 ggggcactggataagga-caattaatatgcattaaataaatgaatctcatttaattcatctcaaataaa-tgtaaactatgtcaattaattaaaa 39864860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 45395426 - 45395560
Alignment:
Q  16 tggacatcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctc 114  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  45395426 tggacatcaagcggtggaaaggaaaacatgggatgagagaatataattagttaatggaaagaaaaatatccaaggatggtaataacatcgtgggtttctc 45395525  T
Q  115 gtgcatggtttatgtcgtgtaataaagcattttcc 149  Q
    |||||||||||||||||||||||||||||||||||    
T  45395526 gtgcatggtttatgtcgtgtaataaagcattttcc 45395560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 23567011 - 23566891
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 276  Q
    |||||||||||||||||||| |||||||| | |||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23567011 ggggcactggataaggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 23566912  T
Q  277 aaaagctatattcaatactct 297  Q
    |||||||||||||||||||||    
T  23566911 aaaagctatattcaatactct 23566891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 39737844 - 39737730
Alignment:
Q  179 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 278  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||| | ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  39737844 ggcactggataaggaacaataaatagtaattaaataaatagatcttatttaattcatctcaattaaaatataatatatgttaactaattaaaaataataa 39737745  T
Q  279 aagctatattcaata 293  Q
    |||||||||||||||    
T  39737744 aagctatattcaata 39737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 785883 - 785770
Alignment:
Q  180 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaa 279  Q
    |||||| |||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||| ||||||||| ||||  ||| ||||||||| ||||||     
T  785883 gcactgaataaggaacattaaataggcaataaataaatggatctcacttgatttaccttaatcaaagtgtaaaatattgcaattaattaaaattaataat 785784  T
Q  280 agctatattcaata 293  Q
     |||||||||||||    
T  785783 tgctatattcaata 785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 30385836 - 30385749
Alignment:
Q  206 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 293  Q
    |||||||||||| ||||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  30385836 caataaataaatggatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgatatattcaata 30385749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 39737232 - 39737293
Alignment:
Q  209 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    |||||||||  |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  39737232 taaataaatgaatctcacttaatccatctcaattaaa-tgtaaaatatgtcaactaattaaaa 39737293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 53153941 - 53153855
Alignment:
Q  207 aataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 293  Q
    |||||||| ||  ||||||||| ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  53153941 aataaatagatgaatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 53153855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 23566432 - 23566522
Alignment:
Q  179 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    ||||||||||||| |||| | ||||  || |||||||||  |||| |||||||||||||||| |||| |||||  ||||||||||||||||||    
T  23566432 ggcactggataag-aacaattaatatgcattaaataaataaatcttacttaattcatctcaaataaa-tgtaaactatgtcaactaattaaaa 23566522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 50470355 - 50470421
Alignment:
Q  33 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 99  Q
    ||||||||||||||| ||||||||  ||||| |||| ||||| | |||||||||| ||| |||||||    
T  50470355 aaggaaaacatggggagagagaattcaattagttaacggaaatataaacatccaaagatggtaatag 50470421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 53153517 - 53153590
Alignment:
Q  198 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    ||||||| |||||||||||| ||| ||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  53153517 taaataggcaataaataaatggatttcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 53153590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 19917 - 20052
Alignment:
Q  16 tggacatcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctc 114  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||| |||||||| ||||||    
T  19917 tggacatcaagcggtggaaaggaaaacatgggatgagagaatataatcaattaatggaaagaaaaacatccaaggatgataataacatcgtggctttctc 20016  T
Q  115 gtgcatggtttatgtcgtgtaataaagcattttcca 150  Q
    ||||||||||||||||||||||||||||||||||||    
T  20017 gtgcatggtttatgtcgtgtaataaagcattttcca 20052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 31167076 - 31166956
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 276  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31167076 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 31166977  T
Q  277 aaaagctatattcaatactct 297  Q
    |||||||||||||||||||||    
T  31166976 aaaagctatattcaatactct 31166956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 21971546 - 21971651
Alignment:
Q  189 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 288  Q
    |||||||| |||||| | | ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21971546 aaggaacaataaataataattaaataaat-gatctcacttaactcatctcaattaaagtataatatatgtcaactaattaaaaataataaaagctatatt 21971644  T
Q  289 caatact 295  Q
    |||||||    
T  21971645 caatact 21971651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 27596002 - 27596084
Alignment:
Q  198 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaag 281  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27596002 taaatagccaataaataaatggatctcacttaattcatctcaattaaagtgtaatata-gtcaactaattaaaaataataaaag 27596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 174 - 293
Target Start/End: Complemental strand, 28751045 - 28750927
Alignment:
Q  174 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 273  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  28751045 ccaggggcactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 28750946  T
Q  274 aataaaagctatattcaata 293  Q
    |||||| | |||||||||||    
T  28750945 aataaatg-tatattcaata 28750927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 36998156 - 36998070
Alignment:
Q  298 ctgatgaggtttgccttagcagcttttcacattaagtccttcaaagccttacctgaaaacagccatatgttaatgttagattttacaacc 387  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||   || |||||||||||||||||    
T  36998156 ctgatgaggtttgccttagcagctttccacattaaatccttcaaagccttacctgaaaacagccata---tattgttagattttacaacc 36998070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 38916507 - 38916392
Alignment:
Q  178 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 277  Q
    ||||||||||||| ||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||||||| |||| |||||||||||||| |||||    
T  38916507 gggcactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 38916408  T
Q  278 aaagctatattcaata 293  Q
    || | |||||| ||||    
T  38916407 aatgttatatttaata 38916392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 27230474 - 27230578
Alignment:
Q  189 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 288  Q
    |||||||| | ||||| ||||||||||||  |||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  27230474 aaggaacaattaatagacaataaataaatgaatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatatt 27230573  T
Q  289 caata 293  Q
    |||||    
T  27230574 caata 27230578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 15577468 - 15577578
Alignment:
Q  176 aggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataa 275  Q
    ||||||||||||||||||||| ||||||| |||     |||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |||    
T  15577468 aggggcactggataaggaacaataaatagacaa-----aaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaattaa 15577562  T
Q  276 taaaagctatattcaa 291  Q
    |||| | |||||||||    
T  15577563 taaatgatatattcaa 15577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 21972184 - 21972092
Alignment:
Q  178 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    ||||||||||||||||||| | || |  || |||||||||  |||||||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  21972184 gggcactggataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaattaaa-tgtaaaatatgtcaactaattaaaa 21972092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 32741895 - 32741787
Alignment:
Q  185 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 284  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||  || | || ||||||||| ||| |||| ||||||| |||||| ||||||| ||||    
T  32741895 ggataatgaacaataaataagcaataaataaatggatctcacttggtttaccttaattaaagtataaaatatttcaactatttaaaattaataaatgcta 32741796  T
Q  285 tattcaata 293  Q
    |||||||||    
T  32741795 tattcaata 32741787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 38916045 - 38916138
Alignment:
Q  178 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    |||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  38916045 gggcactggataagaaataataaataggcaataaataaatagatctcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 38916138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 21948149 - 21948209
Alignment:
Q  238 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctc 298  Q
    |||| ||| ||||| ||| ||||||||||||||| |||||||| || ||||||||||||||    
T  21948149 caatcaaaatgtaaaataagtcaactaattaaaattaataaaaactctattcaatactctc 21948209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 17922857 - 17922991
Alignment:
Q  16 tggacatcaagcggtggaagg--aaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttct 113  Q
    ||||||||||||||||||| |  |||||||||| ||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||||||||||    
T  17922857 tggacatcaagcggtggaaaggaaaaacatggg-tgagagaatataattagctaatggaaagaaaaacatccaagggtggtaatagcatcgtgggtttct 17922955  T
Q  114 cgtgcatggtttatgtcgtgtaataaagcattttcc 149  Q
    ||||||||||||||||||||||||||||||||||||    
T  17922956 cgtgcatggtttatgtcgtgtaataaagcattttcc 17922991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 8700890 - 8701004
Alignment:
Q  179 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 278  Q
    ||||| |||||||||||| ||||||| ||||||||| || |||||||||| ||| | || ||||||||||||| |||| | |||||||||||| ||||||    
T  8700890 ggcaccggataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaagtgtaaaatattttaactaattaaaattaataa 8700989  T
Q  279 aagctatattcaata 293  Q
    | | |||||||||||    
T  8700990 atgttatattcaata 8701004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 12307388 - 12307301
Alignment:
Q  206 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 293  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  12307388 caataaataaatagatctcacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 12307301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 7727468 - 7727381
Alignment:
Q  206 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 293  Q
    |||||||||||||||||||||||  || | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  7727468 caataaataaattgatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 7727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 293
Target Start/End: Original strand, 604984 - 605096
Alignment:
Q  184 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaac---taattaaaaataataaaa 280  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||| ||| |||| |||||   ||||||||| |||||||     
T  604984 tggataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagtataaaatatttcaactaataattaaaattaataaat 605083  T
Q  281 gctatattcaata 293  Q
    | |||||||||||    
T  605084 gttatattcaata 605096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 12306970 - 12307064
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||| | || ||| | || ||||||||||  ||||| |||||||||||||||    
T  12306970 ggggcactggataagaaataataaatagacaataaataaatgaatcttaattgatttacctaaattaaagtgagatataagtcaactaattaaaa 12307064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 8701357 - 8701263
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    |||||||||| |||| || | ||||||| ||||||||||||  |||||| || ||| |  | ||||||||||  ||||| |||||||||||||||    
T  8701357 ggggcactggttaagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaactaattaaaa 8701263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 26759207 - 26759323
Alignment:
Q  181 cactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaa 280  Q
    |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26759207 cactggataaggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaagtataatatatgccaactaattaaaaataataaaa 26759306  T
Q  281 gctatattcaatactct 297  Q
    |||||||| ||||||||    
T  26759307 gctatattaaatactct 26759323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 186 - 297
Target Start/End: Original strand, 146644 - 146755
Alignment:
Q  186 gataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctat 285  Q
    ||||| ||||| ||||||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  146644 gataatgaacaataaatagccattaaataaatggatctcactttattaatctcaattaaagtgtaatatatgtcaactaattaaaattaataaaaactat 146743  T
Q  286 attcaatactct 297  Q
    ||||||||||||    
T  146744 attcaatactct 146755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 174 - 293
Target Start/End: Original strand, 308301 - 308420
Alignment:
Q  174 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 273  Q
    |||||||||| |||||| ||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  308301 ccaggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 308400  T
Q  274 aataaaagctatattcaata 293  Q
    |||||| | |||||||||||    
T  308401 aataaatgttatattcaata 308420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 186682 - 186790
Alignment:
Q  185 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 284  Q
    |||||||||||| |||||||  ||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||| ||||||| | ||    
T  186682 ggataaggaacaataaatagctaataaataaatggatctcacttgatttatcttaattaaattgtaaaatatttcaactaattaaaattaataaatgtta 186781  T
Q  285 tattcaata 293  Q
    |||||||||    
T  186782 tattcaata 186790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 187140 - 187049
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaatta 268  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||||| ||| || | || ||||||||||  ||||| ||||||||||||    
T  187140 ggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaagtgagatataagtcaactaatta 187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 147251 - 147190
Alignment:
Q  209 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    |||||| || ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||    
T  147251 taaatatatggatctcacttaattcatcttaattaaa-tataaaatatgtcaactaattaaaa 147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 25277195 - 25277141
Alignment:
Q  239 aattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 293  Q
    ||||||||||| | |||| | |||||||||||| ||||||| |||||||||||||    
T  25277195 aattaaagtgtgaaatattttaactaattaaaattaataaatgctatattcaata 25277141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 43724218 - 43724158
Alignment:
Q  238 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctc 298  Q
    |||| ||| ||||| ||| ||||||||||||| | |||||||| || ||||||||||||||    
T  43724218 caatcaaaatgtaaaataagtcaactaattaagattaataaaaactctattcaatactctc 43724158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 39121956 - 39121836
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 276  Q
    |||||||||||||||||||| |||||||| | |||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  39121956 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataatatatgtcaactaattaaaaataat 39121857  T
Q  277 aaaagctatattcaatactct 297  Q
    ||||| |||||||||||||||    
T  39121856 aaaagttatattcaatactct 39121836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 3623465 - 3623594
Alignment:
Q  21 atcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgca 119  Q
    |||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||| | ||||| ||||||||||    
T  3623465 atcaagcgatggaaaggaaaatatggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgca 3623564  T
Q  120 tggtttatgtcgtgtaataaagcattttcc 149  Q
    |||||| | ||||  |||||||||||||||    
T  3623565 tggtttctatcgtcaaataaagcattttcc 3623594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 14393983 - 14394091
Alignment:
Q  185 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 284  Q
    |||||||||||| ||||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||  ||||||| ||||    
T  14393983 ggataaggaacaataaataagcaataaataaatggatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaatttaataaatgcta 14394082  T
Q  285 tattcaata 293  Q
    |||||||||    
T  14394083 tattcaata 14394091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 292
Target Start/End: Original strand, 20983543 - 20983658
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 276  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  20983543 ggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 20983642  T
Q  277 aaaagctatattcaat 292  Q
    ||| | ||||||||||    
T  20983643 aaatgttatattcaat 20983658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 25672272 - 25672380
Alignment:
Q  185 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 284  Q
    |||||||||||| | ||||  |||||||||||| ||||||||||  || || | ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  25672272 ggataaggaacaatgaatatgcaataaataaatggatctcacttggtttatattaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 25672371  T
Q  285 tattcaata 293  Q
    |||| ||||    
T  25672372 tatttaata 25672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 20983933 - 20983842
Alignment:
Q  180 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    |||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  20983933 gcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 20983842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 14394438 - 14394344
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 271  Q
    ||||||||| ||||| || | ||||||| ||||||||||||  |||||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  14394438 ggggcactgaataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 14394344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 40888792 - 40888900
Alignment:
Q  185 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 284  Q
    ||||||| |||| | ||||| ||||| |||||| ||||| |||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  40888792 ggataagaaacaattaataggcaatacataaatggatctaacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 40888891  T
Q  285 tattcaata 293  Q
    |||||||||    
T  40888892 tattcaata 40888900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 23269946 - 23270014
Alignment:
Q  177 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 245  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  23269946 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacttgatttacctcaattaaa 23270014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 8 times since January 2019
Visitors: 5776