View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_16 (Length: 373)
Name: NF0786_low_16
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 39185716 - 39185350
Alignment:
| Q |
7 |
tttattttaaaaatttatgtcatgagtgcattggaaattaaaatgttttacnnnnnnnatagaataacttattttcttagaatccttaaagagtgccccg |
106 |
Q |
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| T |
39185716 |
tttattttaaaaatttatgtcattagcgcattggaaattgaaatgtttcactttttttatagaataatttattttcttagaatccttaaagagtgccccg |
39185617 |
T |
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| Q |
107 |
gaatccggaggcactcattaacaagaccctaacaataataatagatagatatcttttatatcacatatattcacacgcctcccccgatggtaccatccaa |
206 |
Q |
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| T |
39185616 |
gagtccggaggcactcgttaacaagaccctaacaataataatagatagatatcttttatatcacacatattcatacgcctcccccgatggtaccatccaa |
39185517 |
T |
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| Q |
207 |
aaggtataatttctaaggccacatacataatccctagcattctcttgttctcattttcacgtgactccacgatagagagaacctgtggcttgtgtttttg |
306 |
Q |
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| T |
39185516 |
aaggtataatttctaaggccacatacataatccctagcattctcttgttctcattttcacgtgactccaagatagagagaacctgtgttttgtgtttttg |
39185417 |
T |
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| Q |
307 |
tttcagattcgttgttgtatcttcgaattcgagtttgggactcttaggattggggtttatatcgttc |
373 |
Q |
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| T |
39185416 |
tttcagattcgttgttgtatctttgaattcgagtttgggtctcttaggattggggtttctatcgttc |
39185350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 287
Target Start/End: Complemental strand, 39186032 - 39185884
Alignment:
| Q |
140 |
aataataatagatagatatcttttatatcacatatattcacacgcctcccccga-tggtaccatccaaaaggtataatttctaaggccacatacataatc |
238 |
Q |
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| T |
39186032 |
aataataatagataaatatcttttatattacatatatttacacgcctcccccgaatgataccatccaaaatatataatttctaaggccacatgcataatc |
39185933 |
T |
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| Q |
239 |
cctagcattctcttgttctcattttcacgtgactccacgatagagagaa |
287 |
Q |
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| T |
39185932 |
tctagcattctcttgttctcattttcacatgactccaagatagtgagaa |
39185884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 44435936 - 44436033
Alignment:
| Q |
171 |
atatattcacacgcctcccccgatggtaccatccaaaaggtataatttctaaggccacatacataatccctagcattctcttgttctcattttcacgtg |
269 |
Q |
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| T |
44435936 |
atatattcacatgcctccct-gctggtacaatccaaacgatataattccaaaggccacaagcataatctctaacattctcttgttcttattttcgcgtg |
44436033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 27173279 - 27173340
Alignment:
| Q |
214 |
aatttctaaggccacatacataatccctagcattctcttgttctcattttcacgtgactccacgata |
280 |
Q |
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| T |
27173279 |
aatttctaaggccacaatcataat-----gcattctcttgttctcaatttcacgtgactccaagata |
27173340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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