View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0786_low_17 (Length: 370)

Name: NF0786_low_17
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0786_low_17
NF0786_low_17
[»] chr3 (2 HSPs)
chr3 (33-370)||(1138253-1138582)
chr3 (221-262)||(28802764-28802805)
[»] chr4 (3 HSPs)
chr4 (33-125)||(51033730-51033816)
chr4 (224-262)||(207500-207538)
chr4 (221-258)||(47789196-47789233)
[»] chr2 (2 HSPs)
chr2 (221-258)||(3110531-3110568)
chr2 (225-262)||(28044709-28044746)
[»] chr1 (3 HSPs)
chr1 (221-262)||(6025961-6026002)
chr1 (223-258)||(1118941-1118976)
chr1 (221-266)||(26161596-26161641)
[»] chr5 (1 HSPs)
chr5 (227-259)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (224-267)||(32888960-32889003)
chr7 (223-259)||(7245942-7245978)
[»] chr6 (2 HSPs)
chr6 (223-257)||(2730831-2730865)
chr6 (222-259)||(26373115-26373152)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 33 - 370
Target Start/End: Original strand, 1138253 - 1138582
Alignment:
Q  33 gcctccaagacatgccaactattggccttccactcatcatgtgcacacaacgcaacacctacaacatcataaaaagagaatgcatcaatgcaacaactgt 132  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  1138253 gcctccaagacatgccaacaattggccttccacttatcctgtgcaca--acgcaacacctacaacatcataaaaagagaatacatcaatgcaaaaactgt 1138350  T
Q  133 agagaagaaaaagaaaaagaatatcttgtgtgggtttttaatcccaaaatagaggtttgattaaattatactatgttacaatgctttagctatagccact 232  Q
    ||||||||      ||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1138351 agagaaga------aaaagaatatcttttgtcggtttttaattccaaaatagaggtttgcttaaattatactatgttacaatgctttagctatagccact 1138444  T
Q  233 atttgacaactctttgtactaaatagcataccactcttgcagtggattatttaccttcatacagctacgacagagtggtcgatattgaaccaccgtcgtg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1138445 atttgacaactctttgtactaaatagcataccactcttgcagtggattatttaccttcatacagctacgacagagtggtcgatattgaaccaccgtcatg 1138544  T
Q  333 atgtccccatctttcgttcacacattagcttcaaaaaa 370  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  1138545 atgtccccatctttcattcacagattagcttcaaaaaa 1138582  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 28802764 - 28802805
Alignment:
Q  221 gctatagccactatttgacaactctttgtactaaatagcata 262  Q
    |||||||||||||||||||||| |||| || |||||||||||    
T  28802764 gctatagccactatttgacaacactttatattaaatagcata 28802805  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 51033730 - 51033816
Alignment:
Q  33 gcctccaagacatgccaactattggccttccactcatcatgtgcacacaacgcaacacctacaacatcataaaaagagaatgcatcaatgcaa 125  Q
    ||||||||||||||||||||||||||||||||| |||| | |  ||||||||| ||||| ||||   ||||||||||||||||| ||||||||    
T  51033730 gcctccaagacatgccaactattggccttccacacatcctat--acacaacgc-acacccacaa---cataaaaagagaatgcagcaatgcaa 51033816  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 207538 - 207500
Alignment:
Q  224 atagccactatttgacaactctttgtactaaatagcata 262  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  207538 atagccactatttgacaatactttgtactaaatagcata 207500  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 47789233 - 47789196
Alignment:
Q  221 gctatagccactatttgacaactctttgtactaaatag 258  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  47789233 gctatagccactatttgacaacagtttgtactaaatag 47789196  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 3110531 - 3110568
Alignment:
Q  221 gctatagccactatttgacaactctttgtactaaatag 258  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3110531 gctatagccactatttgacaacgctttgtactaaatag 3110568  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 28044709 - 28044746
Alignment:
Q  225 tagccactatttgacaactctttgtactaaatagcata 262  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  28044709 tagccactatttgacaacactttgtactaaatcgcata 28044746  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 6025961 - 6026002
Alignment:
Q  221 gctatagccactatttgacaactctttgtactaaatagcata 262  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  6025961 gctatagccactatttgacaacattttgtactaaatagcata 6026002  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 1118976 - 1118941
Alignment:
Q  223 tatagccactatttgacaactctttgtactaaatag 258  Q
    |||||||||||||||||||| |||||||||||||||    
T  1118976 tatagccactatttgacaacactttgtactaaatag 1118941  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 26161596 - 26161641
Alignment:
Q  221 gctatagccactatttgacaactctttgtactaaatagcataccac 266  Q
    ||||||||  |||||||||||  |||||||||||||||||||||||    
T  26161596 gctatagctgctatttgacaatactttgtactaaatagcataccac 26161641  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 28734169 - 28734201
Alignment:
Q  227 gccactatttgacaactctttgtactaaatagc 259  Q
    |||||||||||||||||||||||||||||||||    
T  28734169 gccactatttgacaactctttgtactaaatagc 28734201  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 267
Target Start/End: Complemental strand, 32889003 - 32888960
Alignment:
Q  224 atagccactatttgacaactctttgtactaaatagcataccact 267  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||    
T  32889003 atagccactatttgacaatactttgtactaaatagcatatcact 32888960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 7245942 - 7245978
Alignment:
Q  223 tatagccactatttgacaactctttgtactaaatagc 259  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  7245942 tatagccgctatttgacaacactttgtactaaatagc 7245978  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 2730831 - 2730865
Alignment:
Q  223 tatagccactatttgacaactctttgtactaaata 257  Q
    |||||||||||||||||||| ||||||||||||||    
T  2730831 tatagccactatttgacaacactttgtactaaata 2730865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 26373152 - 26373115
Alignment:
Q  222 ctatagccactatttgacaactctttgtactaaatagc 259  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  26373152 ctataaccactatttgacaacactttgtactaaatagc 26373115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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