View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_19 (Length: 331)
Name: NF0786_low_19
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 47689435 - 47689611
Alignment:
| Q |
1 |
tccaggccaagggaaaaatgaagatgaatctgaagctgaaactggtgatgatcttaaagttggagatttgttgcaatttgactttgaaaccatcagaata |
100 |
Q |
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| T |
47689435 |
tccaggccaagggaaaaatgaagatgaatctgaagctgaaactggtgatgatcttaaagttggagatttgttgcaatttgactttgaaaccatcagaata |
47689534 |
T |
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| Q |
101 |
gctacaagcaacttctctgatgcaaataaacttggtgagggtggttttggaactgtttataaggtaaaataattatc |
177 |
Q |
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| T |
47689535 |
gctacaagcaacttctctgatgcaaataaacttggtgagggtggttttggaactgtttataaggtaaaataattatc |
47689611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 47677989 - 47678152
Alignment:
| Q |
4 |
aggccaagggaaaaatgaagatgaatctgaagctgaaactggtgatgatcttaaagttggagatttgttgcaatttgactttgaaaccatcagaatagct |
103 |
Q |
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| T |
47677989 |
aggccaagataaaaatgaagatgaagatgaagctgaagctggtaataatcttaaagttggcgacttgttgcaatttgactttgcaaccatcagattagct |
47678088 |
T |
|
| Q |
104 |
acaagcaacttctctgatgcaaataaacttggtgagggtggttttggaactgtttataaggtaa |
167 |
Q |
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| T |
47678089 |
acaagcaacttctctgatgcaaataagcttggtcaaggtggatttggaactgtttataaggtaa |
47678152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 2106793 - 2106841
Alignment:
| Q |
276 |
aaacaatttaccaacatgttattgttttcccacatttaaaaggtttatg |
324 |
Q |
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| T |
2106793 |
aaacaatttaccaacatgttattgttttgcaacagttgaaaggtttatg |
2106841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 23189090 - 23189144
Alignment:
| Q |
110 |
aacttctctgatgcaaataaacttggtgagggtggttttggaactgtttataagg |
164 |
Q |
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| T |
23189090 |
aacttctcagatgcaaacaagcttggtgaaggtggctttggacctgtttataagg |
23189144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 21422782 - 21422742
Alignment:
| Q |
125 |
aataaacttggtgagggtggttttggaactgtttataaggt |
165 |
Q |
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| T |
21422782 |
aataaacttggagagggaggttttggacctgtttataaggt |
21422742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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