View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_2 (Length: 631)
Name: NF0786_low_2
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_2 |
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| [»] chr3 (10 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 338 - 631
Target Start/End: Complemental strand, 38032932 - 38032639
Alignment:
| Q |
338 |
cgacaagtccatgtgaagagcatgtgaagtcctcgtgattacgatctccatcacattcttcaaacatcacaagaaacatgcaactcacggattaattggt |
437 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38032932 |
cgacaagtccatgtgaagatcatgggaagtcctcgtgattacgatctccatcacattcttcaaacatcacaagaaacatgcaactcacggattaattggt |
38032833 |
T |
|
| Q |
438 |
tactagcgttggtttatgtgatcaactgtcggtatattcatttcttcatttacaattcgcttatccttatagtctaaagaaaggctttctttaaacaaag |
537 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
38032832 |
tactagcgttggtttatgtgatcaactgtcagtatattcatttcttcatttacaattcgcttatccttatagtctaaagaaaggttttctttgaacaaag |
38032733 |
T |
|
| Q |
538 |
gtttatatgaccccgtaatatatgtaaaagaattaccagtcttggattgtgtttgtgaatgaaatttaattattttagatgaaacaagaaacaa |
631 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
38032732 |
gtttatatgaccccgtaatatatgtaaaagaattaccagtcctggcttgtgtttgtgcatgaaatttaattattttagatgacacaagaaacaa |
38032639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 341 - 631
Target Start/End: Complemental strand, 38028107 - 38027814
Alignment:
| Q |
341 |
caagtccatgtgaagagcatgtgaagtcctcgtgattacgatctccatcacattcttcaaacatcacaagaaacatgcaactcacggattaattggttac |
440 |
Q |
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|||| ||||||||| |||| | |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || |
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| T |
38028107 |
caagaccatgtgaatagcacgggaagtccttatgattatggtctccatcacattcttcaaacatcacaagaaacatgcaactcgcagattaattggtgac |
38028008 |
T |
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| Q |
441 |
tagcgt---tggtttatgtgatcaactgtcggtatattcatttcttcatttacaattcgcttatccttatagtctaaagaaaggctttctttaaacaaag |
537 |
Q |
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|| ||| || ||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||| || || |||| || |||||||||||| |
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| T |
38028007 |
taacgtcgttgctttatgtgatcaattattggtgtattcatttcttcatttacaattcgcttatccttatagtttataggaaggtttactttaaacaaag |
38027908 |
T |
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| Q |
538 |
gtttatatgaccccgtaatatatgtaaaagaattaccagtcttggattgtgtttgtgaatgaaatttaattattttagatgaaacaagaaacaa |
631 |
Q |
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|||| |||| ||| |||||||||| |||||||||| ||||||||| ||||||||||| ||| ||| |||||||||||||||| |||| |||||| |
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| T |
38027907 |
gtttgtatggcccagtaatatatgcaaaagaattatcagtcttggcttgtgtttgtgcatgcaatgtaattattttagatgacacaaaaaacaa |
38027814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 38033474 - 38033341
Alignment:
| Q |
72 |
tcgaagaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcct |
171 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38033474 |
tcgaacaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcct |
38033375 |
T |
|
| Q |
172 |
aataataaaacattcagccaaattataatagttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38033374 |
aataataaaacattcagccaaattataatagttg |
38033341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 38028439 - 38028307
Alignment:
| Q |
73 |
cgaagaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggccta |
172 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38028439 |
cgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggccta |
38028340 |
T |
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| Q |
173 |
ataataaaacattcagccaaattataatagttg |
205 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38028339 |
ataataaaacattcagccaaattataatagttg |
38028307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 338 - 580
Target Start/End: Complemental strand, 38035720 - 38035479
Alignment:
| Q |
338 |
cgacaagtccatgtgaagagcatgtgaagtcctcgtgattacgatctccatcacattcttcaaacatcacaagaaacatgcaactcacggattaattggt |
437 |
Q |
| |
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|||||||||||| ||||||||| | ||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
38035720 |
cgacaagtccatctgaagagcacggaaagtccttgtgatcgtgatcttcactacattcttcaaacatcacaagaaacatgcaaatcacagattaattggt |
38035621 |
T |
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| Q |
438 |
tactagcgttggtttatgtgatcaactgtcggtatattcatttcttcatttacaattcgcttatccttatagtctaaagaaaggctttctttaaacaaag |
537 |
Q |
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|||| | ||||||||| ||||||| | | |||||||||||||||||||||||| |||||||||||||||||| | |||| || ||||||||||||||| |
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| T |
38035620 |
gactaacattggtttatctgatcaattattggtatattcatttcttcatttacatttcgcttatccttatagt-ttaagacagattttctttaaacaaag |
38035522 |
T |
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| Q |
538 |
gtttatatgaccccgtaatatatgtaaaagaattaccagtctt |
580 |
Q |
| |
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| || |||| || ||||||||||| ||||||||||| |||||| |
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| T |
38035521 |
ggttgtatggcctcgtaatatatgcaaaagaattactagtctt |
38035479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 38033069 - 38032984
Alignment:
| Q |
203 |
ttgtacttattgttttggacaatttctcttttaattatgctatagggatggtttnnnnnnnnctgtagaatcactctagagaaaac |
288 |
Q |
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||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38033069 |
ttgtacttattattttggccaatttctcttttaattttgctatagggatggtttaaaaaaaactgtagaatcactctagagaaaac |
38032984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 444 - 521
Target Start/End: Complemental strand, 38039083 - 38039006
Alignment:
| Q |
444 |
cgttggtttatgtgatcaactgtcggtatattcatttcttcatttacaattcgcttatccttatagtctaaagaaagg |
521 |
Q |
| |
|
||||||||||||| ||||| | | ||||| |||||||||||||||||| ||| |||||||||||||| ||||||||| |
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| T |
38039083 |
cgttggtttatgttatcaattattggtatgttcatttcttcatttacatttcacttatccttatagttaaaagaaagg |
38039006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 38036444 - 38036348
Alignment:
| Q |
98 |
ttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcagccaaattat |
197 |
Q |
| |
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|||||||||||| |||||||||| | ||||||| | | ||||| | | |||||||||||||||||||||| | ||||||| ||||||||||||| ||| |
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| T |
38036444 |
ttataatgatgagataagggtatgtgctgtaagcagtatcgagat-cgaatattcctgcaaatttctctgac---ataataacacattcagccaaactat |
38036349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 50910450 - 50910538
Alignment:
| Q |
99 |
tataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcagccaaa |
193 |
Q |
| |
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||||||||||||||||| | || | ||||||| ||| |||||| || |||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
50910450 |
tataatgatgacataagagaatgtgctgtaagcaatatcgagc-tcgaatattcctgcaaatt--tctggcc---taataaaacattcagccaaa |
50910538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 582
Target Start/End: Complemental strand, 50913914 - 50913866
Alignment:
| Q |
534 |
aaaggtttatatgaccccgtaatatatgtaaaagaattaccagtcttgg |
582 |
Q |
| |
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|||||||| |||| || | ||||||||| |||||||||||||||||||| |
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| T |
50913914 |
aaaggtttgtatggcctcctaatatatgcaaaagaattaccagtcttgg |
50913866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 21604427 - 21604295
Alignment:
| Q |
73 |
cgaagaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggccta |
172 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21604427 |
cgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggccta |
21604328 |
T |
|
| Q |
173 |
ataataaaacattcagccaaattataatagttg |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
21604327 |
ataataaaacattcagccaaattataatagttg |
21604295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 521
Target Start/End: Complemental strand, 21608793 - 21608716
Alignment:
| Q |
444 |
cgttggtttatgtgatcaactgtcggtatattcatttcttcatttacaattcgcttatccttatagtctaaagaaagg |
521 |
Q |
| |
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||||||||||||| ||||| | | ||||| |||||||||||||||||| ||| ||||||||||||| ||||||||| |
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| T |
21608793 |
cgttggtttatgttatcaattattggtatgttcatttcttcatttacatttcagttatccttatagttaaaagaaagg |
21608716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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