View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0786_low_20 (Length: 324)

Name: NF0786_low_20
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0786_low_20
NF0786_low_20
[»] chr1 (11 HSPs)
chr1 (23-297)||(2021055-2021311)
chr1 (127-297)||(2007918-2008088)
chr1 (135-297)||(3380267-3380429)
chr1 (62-114)||(1794289-1794341)
chr1 (28-101)||(2008096-2008170)
chr1 (228-283)||(3217176-3217231)
chr1 (231-296)||(2947210-2947275)
chr1 (145-283)||(1794138-1794276)
chr1 (90-131)||(2013116-2013158)
chr1 (234-296)||(3353413-3353475)
chr1 (228-297)||(3366435-3366504)
[»] chr2 (3 HSPs)
chr2 (228-297)||(20924554-20924623)
chr2 (215-281)||(20936180-20936246)
chr2 (228-281)||(20954421-20954474)
[»] chr4 (1 HSPs)
chr4 (228-283)||(21238958-21239013)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 2021311 - 2021055
Alignment:
Q  23 tgtggatggtgaccattgttggatcattaaaaagaaacaaaatggtaatatacatttaagagttgaataaaaaacatcatgaagagacttccccaaggta 122  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         
T  2021311 tgtggatggtgaccattgttggatcatgaaaaagaaacaaaatggcaatatacatttaagagttgaataaaaaacatcatgaagagacttcccca----- 2021217  T
Q  123 aacaacttccccaaggtaaacaacttcagcttgtgcggaggctctcttgaatcgcaacagttctgacatcaacttagatccgacgttcaaatcaggcttc 222  Q
                 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2021216 -------------aggtaaacaacttcagcttgtgcggaggctctcttgaatcgcagcagttctgacatcaacttagatccgacgttcaaatcaggcttc 2021130  T
Q  223 acttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagag 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2021129 acttccatcttttctagcataggcgaatagagaagtagaaatctcaaaaaatctaattcagctttcataccagag 2021055  T

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Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 127 - 297
Target Start/End: Complemental strand, 2008088 - 2007918
Alignment:
Q  127 acttccccaaggtaaacaacttcagcttgtgcggaggctctcttgaatcgcaacagttctgacatcaacttagatccgacgttcaaatcaggcttcactt 226  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||  |||||||||     
T  2008088 acttccccaaggtaaacaacttcagcttgtgctgaggctctcttgaatcgcaacaattctgacatcaacttcgatccaacgttaaaattgggcttcactc 2007989  T
Q  227 ccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagag 297  Q
     |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| || ||||||    
T  2007988 tcatcttttctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagag 2007918  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 3380429 - 3380267
Alignment:
Q  135 aaggtaaacaacttcagcttgtgcggaggctctcttgaatcgcaacagttctgacatcaacttagatccgacgttcaaatcaggcttcacttccatcttt 234  Q
    |||||||| ||||||||||| | | || ||||||||||| || |  ||||||| ||||||||| |    |||||  | | || |||||||   |||||||    
T  3380429 aaggtaaataacttcagcttctcccgacgctctcttgaagcgaattagttctgtcatcaactttggctggacgtctacaacatgcttcacaatcatcttt 3380330  T
Q  235 tctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagag 297  Q
    ||||||||||| ||||||||||||||||| |  |||||||||||||| | ||| |||||||||    
T  3380329 tctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccagag 3380267  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 1794341 - 1794289
Alignment:
Q  62 aaatggtaatatacatttaagagttgaataaaaaacatcatgaagagacttcc 114  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||||||||    
T  1794341 aaatggtaatatgcatttaagagttgaataaaaaacattatgacgagacttcc 1794289  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 2008170 - 2008096
Alignment:
Q  28 atggtgaccattgttggatcattaaaaagaaacaaaatggta---atatacatttaagagttgaataaaaaacatca 101  Q
    |||||||||||||||||  ||||||| |||  ||||||||||   ||||||||||||||||||||||||||| ||||    
T  2008170 atggtgaccattgttggtacattaaagaga--caaaatggtagtaatatacatttaagagttgaataaaaaatatca 2008096  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 3217176 - 3217231
Alignment:
Q  228 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcag 283  Q
    ||||||||||||||| || ||||| | |||||||||||| ||||||||||||||||    
T  3217176 catcttttctagcatgggagaatacataagtagaaatctgataaaatctaattcag 3217231  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 2947210 - 2947275
Alignment:
Q  231 cttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccaga 296  Q
    |||||||||||| || ||||  ||||| |||||||| |||||||||||||||| ||| ||||||||    
T  2947210 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 2947275  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 283
Target Start/End: Complemental strand, 1794276 - 1794138
Alignment:
Q  145 acttcagcttgtgcggaggctctcttgaatcgcaacagttctgacatcaacttagatccgacgttcaaatcaggcttcacttccatcttttctagcatag 244  Q
    |||||||||||| | ||||| ||||||||  |||| | || | ||| || ||  ||||||||||   || ||||||||||   ||| | |||||| | ||    
T  1794276 acttcagcttgtcctgaggccctcttgaactgcaataattttaacaccacctctgatccgacgtatgaaacaggcttcacagtcatatgttctaggacag 1794177  T
Q  245 gcgaatagagaagtagaaatctcataaaatctaattcag 283  Q
    | ||||| |||||||||||||| ||||||||||||||||    
T  1794176 gagaatatagaagtagaaatctgataaaatctaattcag 1794138  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 2013158 - 2013116
Alignment:
Q  90 taaaaaacatcatgaagagacttcc-ccaaggtaaacaacttc 131  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  2013158 taaaaaacatcatgaagaaacttccgccaaggtaaacaacttc 2013116  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 3353475 - 3353413
Alignment:
Q  234 ttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccaga 296  Q
    ||||||||| || ||||  ||||| |||||||| |||||||||||||||| ||| ||||||||    
T  3353475 ttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 3353413  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 3366504 - 3366435
Alignment:
Q  228 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagag 297  Q
    |||||| ||||||||||| |||||| |||||||||| |  |||||||||| ||| | ||| |||||||||    
T  3366504 catcttgtctagcataggagaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagag 3366435  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 20924623 - 20924554
Alignment:
Q  228 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcagctttcataccagag 297  Q
    ||||||||  |||| ||| |||||||||||||||||||| |||||||||||||||| |||  ||||||||    
T  20924623 catctttttgagcacaggtgaatagagaagtagaaatctgataaaatctaattcagatttggtaccagag 20924554  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 20936246 - 20936180
Alignment:
Q  215 caggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattc 281  Q
    ||||||||||   |||||||||||||| ||| ||||| |||||||||||| | ||||||||||||||    
T  20936246 caggcttcacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattc 20936180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 20954474 - 20954421
Alignment:
Q  228 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattc 281  Q
    ||||||||||||||| || ||||| |||||||||||| | ||||||||||||||    
T  20954474 catcttttctagcatgggagaatatagaagtagaaatttgataaaatctaattc 20954421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 21239013 - 21238958
Alignment:
Q  228 catcttttctagcataggcgaatagagaagtagaaatctcataaaatctaattcag 283  Q
    ||||||||||| |||||| |||| ||||||||||||||| ||||||||||| ||||    
T  21239013 catcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcag 21238958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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