View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_24 (Length: 277)
Name: NF0786_low_24
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 44667878 - 44667618
Alignment:
| Q |
14 |
agaccctgatattcattcaggacaacagaaacccggttacactaactacagaaactcaccccaagtaagaaagaattgatagaaattcattttctaagtt |
113 |
Q |
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| T |
44667878 |
agaccctgatattcattcaggacagcagaaacccggttacactaactacagaaactcaccccaagtaagaa----ttgatagaaattcattttctaagtt |
44667783 |
T |
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| Q |
114 |
gnnnnnnnnnnnnnnnnnnn-gtacatatttatgaggactaagaaataataatattgttgtagggtacaagtagaggtgatagtgacacaaatacaaagt |
212 |
Q |
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| T |
44667782 |
gtattattatattatatatatgtacatatttatgaggactaagaaataataatattgttgtagggtacaagtagaggtgatagtgacacaaatacaaagt |
44667683 |
T |
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| Q |
213 |
ttgctgaaacagaaaaagaagaaggaattttcgagtcaccaaaatctccatatcaatcttcccca |
277 |
Q |
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| T |
44667682 |
ttgctgaaacagaaaaagaagaaggaattttcgagtcaccaaaatctccatatcaatcttcccca |
44667618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 8374047 - 8374091
Alignment:
| Q |
150 |
actaagaaataataatattgttgtagggtacaagtagaggtgata |
194 |
Q |
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| T |
8374047 |
actaagaaataataatattgttgcagggtacaagtagaggtgata |
8374091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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