View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_25 (Length: 276)
Name: NF0786_low_25
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 21260183 - 21260032
Alignment:
| Q |
101 |
tgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttac |
200 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21260183 |
tgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
21260084 |
T |
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| Q |
201 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21260083 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgat |
21260032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 21264764 - 21264613
Alignment:
| Q |
101 |
tgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttac |
200 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21264764 |
tgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
21264665 |
T |
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| Q |
201 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgat |
252 |
Q |
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| T |
21264664 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgat |
21264613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 100 - 252
Target Start/End: Complemental strand, 6847908 - 6847756
Alignment:
| Q |
100 |
ttgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctattttta |
199 |
Q |
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| T |
6847908 |
ttgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctattttta |
6847809 |
T |
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| Q |
200 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatgat |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6847808 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatgat |
6847756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 6843296 - 6843153
Alignment:
| Q |
109 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
208 |
Q |
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| T |
6843296 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaatctatttttactagactga |
6843197 |
T |
|
| Q |
209 |
aataatggtaaattatttctgattacaaatcaaatccctatgat |
252 |
Q |
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| T |
6843196 |
aataatggtaaattatttctgattacaaatcaaatccctatgat |
6843153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 100 - 252
Target Start/End: Complemental strand, 47805337 - 47805185
Alignment:
| Q |
100 |
ttgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctattttta |
199 |
Q |
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|||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47805337 |
ttgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctattttta |
47805238 |
T |
|
| Q |
200 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatgat |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805237 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatgat |
47805185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 47800746 - 47800603
Alignment:
| Q |
109 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
208 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
47800746 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactagattga |
47800647 |
T |
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| Q |
209 |
aataatggtaaattatttctgattacaaatcaaatccctatgat |
252 |
Q |
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| T |
47800646 |
aataatggtaaattatttttgattacaaatcaaatccctatgat |
47800603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 9609677 - 9609706
Alignment:
| Q |
23 |
atttggaaaacctaacatagaatagaacac |
52 |
Q |
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| T |
9609677 |
atttggaaaacctaacatagaatagaacac |
9609706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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