View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_29 (Length: 268)
Name: NF0786_low_29
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_29 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 46873932 - 46873809
Alignment:
| Q |
145 |
aaaaccgcctctcaccatttctcaatcgtcactacaaaactcgcttctcatctcaatctctctcctagcatggccgccgtcacacttctcgctctcggta |
244 |
Q |
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| T |
46873932 |
aaaaccgcctctcaccatttctcaatcgtcactacaaaactcgcttctcatctcaatctctctcctagcatggccgccgtcacacttctcgctctcggta |
46873833 |
T |
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| Q |
245 |
acggctctcccgacgtcttctcat |
268 |
Q |
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| T |
46873832 |
acggctctcccgacgtcttctcat |
46873809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 46874068 - 46874004
Alignment:
| Q |
9 |
caacaatatcaccccatcttgccccattcaatccaatggcggcatcctcaactaccactgcattt |
73 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874068 |
caacaaaatcaccccatcttgccccattcaatccaatggcggcatcctcaactaccactgcattt |
46874004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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