View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_30 (Length: 268)
Name: NF0786_low_30
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 13897980 - 13897760
Alignment:
| Q |
31 |
agacaagacgagttctaattcataagcaatttcacatcttgacattatttattactgctgatgcatgactatatatgtaaatttcagctatcaccagaat |
130 |
Q |
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| T |
13897980 |
agacaagacgagttctaattcataagcaatttcacatcttgacattatttattactgctgatgcatgactatatatgtaaatttcagctatcaccagaat |
13897881 |
T |
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| Q |
131 |
cccagcagcaattacttcaattgccagctaacttggttcaacagttaatatcccgtgctgctgcgagaactatcaaaagggtgtttttgtgatacggaag |
230 |
Q |
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| T |
13897880 |
cccagcagcaattacttcaattgccagctaacttggttcaacagttaatatcccgtgctgctgcgagaactatcaaaagggtgtttttgtgatacggaag |
13897781 |
T |
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| Q |
231 |
tactggagcagctgaaatcat |
251 |
Q |
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| T |
13897780 |
tactggagcagctgatatcat |
13897760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 13930548 - 13930697
Alignment:
| Q |
36 |
agacgagttctaattcataagcaatttcacatcttgacattatttattactgctgatgcatgactatatatgtaaatttcagctatcaccagaatcccag |
135 |
Q |
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| T |
13930548 |
agacaagttctaagtcataaacaatttcacattttgaaattcttcattattgctgatgcatgattatataagcaaaattcagcctccaccagaatcccag |
13930647 |
T |
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| Q |
136 |
cagcaattacttcaattgccagctaacttggttcaacagttaatatcccg |
185 |
Q |
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| T |
13930648 |
aagcaataacttcaacagcaagctaacttggttcgacagttaatatcccg |
13930697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 13894950 - 13894775
Alignment:
| Q |
36 |
agacgagttctaattcataagcaatttcacatcttgacattatttattactgctgatgcatgactatatatgtaaatttcagctatcaccagaatcccag |
135 |
Q |
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| T |
13894950 |
agacaagttataagtcataaacaatttcacattttcatataattcattacttctgatgcatgactacatatgtaaatttcagct-----------cccag |
13894862 |
T |
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| Q |
136 |
cagcaattacttcaattgccagctaacttggttcaacagttaatatcccgtgctgctgcgagaactatcaaaagggtgtttttgtga |
222 |
Q |
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| T |
13894861 |
cagcaattacttcaactgcaagctaacttggtccgacagttaatatccagcgctgctgcaagaactattaggagggtatttttgtga |
13894775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 14023580 - 14023741
Alignment:
| Q |
41 |
agttctaattcataagcaatttcacatcttgacattatttattactgctgatgcatgactatatatgtaaatttcagctatcaccagaatcccagcagca |
140 |
Q |
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| T |
14023580 |
agttctaagtcataaacaatttcacattttgaaattcttcattactgctgatgcatgactgaatatttgaatttaagcatccaccggaatcccagcagca |
14023679 |
T |
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| Q |
141 |
attacttcaattgccagctaacttggttcaacagttaatatcccgtgctgctgcgagaacta |
202 |
Q |
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| T |
14023680 |
actacttcaacagccaattaacttggttagacagttactatcctgcgcttctgtgagaacta |
14023741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 13876973 - 13876787
Alignment:
| Q |
41 |
agttctaattcataagcaatttcacatcttgacattatttattactgctgatgcatgactatatatgtaaatttcagctatcaccagaatcccagcagca |
140 |
Q |
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| T |
13876973 |
agttctaagtcataaacaatttcagattttcatattcttcatgacttctgatgcatgactatatatgtaaatttcagct-----------cccggctgta |
13876885 |
T |
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| Q |
141 |
attacttcaattgccagctaacttggttcaacagttaatatcccgtgctgctgcgagaactatcaaaagggtgtttttgtgatacggaagtactggag |
238 |
Q |
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| T |
13876884 |
aatacttcaactgccagcttacttggtccgactgttaatatccagcgctgctgcgagaactattaggagggtatttttgtgatatggaagtacaggag |
13876787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 13864230 - 13864148
Alignment:
| Q |
140 |
aattacttcaattgccagctaacttggttcaacagttaatatcccgtgctgctgcgagaactatcaaaagggtgtttttgtga |
222 |
Q |
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| T |
13864230 |
aattacttcaactgccagctaacttggtccgacagttaatatccagcgctgctgcgagaactattaggagggtatttttgtga |
13864148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 13474783 - 13474723
Alignment:
| Q |
141 |
attacttcaattgccagctaacttggttcaacagttaatatcccgtgctgctgcgagaact |
201 |
Q |
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| T |
13474783 |
attacttcaactgcaagctaacttggttcgacaattaatatcctgcgctgctgcgagaact |
13474723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 14020808 - 14020876
Alignment:
| Q |
155 |
cagctaacttggttcaacagttaatatcccgtgctgctgcgagaactatcaaaagggtgtttttgtgat |
223 |
Q |
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| T |
14020808 |
cagctaacttggttcgacagttaatatcctgcgctgcttcgagaaatattatgagggtgtttttgtgat |
14020876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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