View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_31 (Length: 261)
Name: NF0786_low_31
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43440676 - 43440448
Alignment:
| Q |
1 |
tcagttacctatcatacttgtgtttgctttgtttgcctcaagttgttgactactcaacccaaaccatagtcttggtaaatacttaatttggtcactcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43440676 |
tcagttacctatcatacttgtgtttgctttgtttgcctcaagttgttgactactcaacccaaaccatagttttggtaaatacttaatttggtcactcaaa |
43440577 |
T |
|
| Q |
101 |
ttaggcactcatatcaactcagtcccttattcaatatatattttagaatagtccctgatttatcaaaatattgatcagtcagtccttccattagttttag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43440576 |
ttaggcactcatatcaactcagtcccttattcaatatatattttagaatagtccctgatttatcaaaatattgatcagttagtccttccattagttttag |
43440477 |
T |
|
| Q |
201 |
tgtgttaaaggatgatgtggtatgttgaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
43440476 |
tgtgttaaaggatgatgtggtatgttgaa |
43440448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43743204 - 43742976
Alignment:
| Q |
1 |
tcagttacctatcatacttgtgtttgctttgtttgcctcaagttgttgactactcaacccaaaccatagtcttggtaaatacttaatttggtcactcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43743204 |
tcagttacctatcatacttgtgtttgctttgtttgcctcaagttgttgactactcaacccaaaccatagttttggtaaatacttaatttggtcactcaaa |
43743105 |
T |
|
| Q |
101 |
ttaggcactcatatcaactcagtcccttattcaatatatattttagaatagtccctgatttatcaaaatattgatcagtcagtccttccattagttttag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43743104 |
ttaggcactcatatcaactcagtcccttattcaatatatattttagaatagtccctgatttatcaaaatattgatcagttagtccttccattagttttag |
43743005 |
T |
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| Q |
201 |
tgtgttaaaggatgatgtggtatgttgaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
43743004 |
tgtgttaaaggatgatgtggtatgttgaa |
43742976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 8645416 - 8645355
Alignment:
| Q |
68 |
agtcttggtaaatacttaatttggtcactcaaattaggcactcatatcaactcagtccctta |
129 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| |||||||| | ||||||| |
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|
| T |
8645416 |
agtcttggtaaataatcaatttggtcactcaaattaggcactcgtatcaacttaatccctta |
8645355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 8642068 - 8642171
Alignment:
| Q |
74 |
ggtaaatacttaatttggtcactcaaattaggcactcatatcaactcagtcccttattcaatatatattttagaatagtccctgatttatcaaaatattg |
173 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||| |||||||| | ||||||||| || | ||||||||||||| |||| ||||| | |||||| |
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| T |
8642068 |
ggtaaataatcaatttggtcactcaaattaagcactcgtatcaacttaatcccttattttgtaaacattttagaatagtttctgacttatctatatattg |
8642167 |
T |
|
| Q |
174 |
atca |
177 |
Q |
| |
|
|||| |
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|
| T |
8642168 |
atca |
8642171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 43623286 - 43623205
Alignment:
| Q |
38 |
tcaagttgttgactactcaacccaaaccatagtcttggtaaatacttaatttggtcactcaaattaggcactcatatcaact |
119 |
Q |
| |
|
||||||||| ||| ||||||||||||||| ||||||| ||| | | ||||||||| |||||||||||||||| |||||||| |
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|
| T |
43623286 |
tcaagttgtcgacgactcaacccaaaccaaagtcttgtaaaagaatcaatttggtcgctcaaattaggcactcgtatcaact |
43623205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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