View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_33 (Length: 255)
Name: NF0786_low_33
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 33123404 - 33123187
Alignment:
| Q |
14 |
aataatataaacgggacttatttttacacttgtacacgttacaaaattatgtt-acttgttactactattagacaaagtctaatttcatatactgttttc |
112 |
Q |
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| T |
33123404 |
aataagataaacgggacttatttttacacttgtacacgttacaaaattatgtttacttgttactactattagacaaagtctaatttcatatactgttttc |
33123305 |
T |
|
| Q |
113 |
aggttgactttttgtctgcatgaaaaatgtatatcttagaaaccacatttttcaccatccatcacaattcatatactacnnnnnnnncttcatatatatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33123304 |
aggttgactttttgtctgcatgaaaaatgtatatcttagaaaccacatttttcaccatccatcacaattcatatactacttttttttcttcatatatatt |
33123205 |
T |
|
| Q |
213 |
gaatttagttaacatttg |
230 |
Q |
| |
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||||| |||||||||||| |
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|
| T |
33123204 |
gaattaagttaacatttg |
33123187 |
T |
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