View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_36 (Length: 252)
Name: NF0786_low_36
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_36 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 43440918 - 43440679
Alignment:
| Q |
13 |
aatattagcattgatgggcatgctgatatactgttaggcgtggagataagaaaatttgtaggaaagtgttggtgctttattggctatgaagtcattctat |
112 |
Q |
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| T |
43440918 |
aatattagcattgatgggcatgctgatatactgttaggcgtagagataagaaaatttgtaggaaactgttggtgctttattggctatgaagtcattctat |
43440819 |
T |
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| Q |
113 |
aagtgatactagtttgtgtttggacattataatatgataatatgatgattagggtaaatgagcattgattctgtgagtgacaagccactctttatatcat |
212 |
Q |
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| T |
43440818 |
aagtgatactagtttgtgtttggacattataatatgataatatgatgattagggtaaatgagcattgattctgtgagtgacaagccactctttatatcat |
43440719 |
T |
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| Q |
213 |
tctatatttgcaaaaatctatccggtgtgtttatgctgat |
252 |
Q |
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| T |
43440718 |
tctatatttgcaaaaatctatctggtgtgtttatgctgat |
43440679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 43743446 - 43743207
Alignment:
| Q |
13 |
aatattagcattgatgggcatgctgatatactgttaggcgtggagataagaaaatttgtaggaaagtgttggtgctttattggctatgaagtcattctat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43743446 |
aatattagcattgatgggcatgctgatatactgttaggcgtagagataagaaaatttgtaggaaactgttggtgctttattggctatgaagtcattctat |
43743347 |
T |
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| Q |
113 |
aagtgatactagtttgtgtttggacattataatatgataatatgatgattagggtaaatgagcattgattctgtgagtgacaagccactctttatatcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43743346 |
aagtgatactagtttgtgtttggacattataatatgataatatgatgattagggtaaatgagcattgattctgtgagtgacaagccactctttatatcat |
43743247 |
T |
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| Q |
213 |
tctatatttgcaaaaatctatccggtgtgtttatgctgat |
252 |
Q |
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| T |
43743246 |
tctatatttgcaaaaatctatctggtgtgtttatgctgat |
43743207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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