View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_38 (Length: 247)
Name: NF0786_low_38
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 9180539 - 9180616
Alignment:
| Q |
46 |
tgataagatctcgtttctccatgcaaccgatcaccggcgctaccaccaccatcacggccgatcacacaaatgccgcca |
123 |
Q |
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| T |
9180539 |
tgataagatctcgtttctccatgcaaccgatcaccggcgctaccaccaccatcacggccgatcacacaaatgccgcca |
9180616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 9180692 - 9180736
Alignment:
| Q |
199 |
gcttccataaacccagatcctttcttatttcatgtaattcctctc |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9180692 |
gcttccataaacccagatcctttcttatttcatgtaattcatctc |
9180736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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