View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0786_low_40 (Length: 226)

Name: NF0786_low_40
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0786_low_40
NF0786_low_40
[»] chr1 (47 HSPs)
chr1 (48-226)||(9516541-9516720)
chr1 (48-226)||(35438675-35438854)
chr1 (51-224)||(43909161-43909329)
chr1 (48-196)||(13241748-13241896)
chr1 (138-220)||(34912939-34913021)
chr1 (74-117)||(33048177-33048220)
chr1 (74-139)||(17919501-17919566)
chr1 (74-139)||(39150392-39150457)
chr1 (71-117)||(52337836-52337882)
chr1 (102-157)||(281012-281068)
chr1 (71-145)||(32716225-32716299)
chr1 (154-224)||(1016404-1016474)
chr1 (71-125)||(6307565-6307618)
chr1 (48-133)||(31100972-31101058)
chr1 (80-133)||(1502791-1502844)
chr1 (71-116)||(23591769-23591814)
chr1 (71-139)||(30363057-30363126)
chr1 (71-124)||(36490842-36490895)
chr1 (71-139)||(6754519-6754587)
chr1 (48-108)||(24669006-24669066)
chr1 (71-139)||(41624877-41624945)
chr1 (57-116)||(50467433-50467493)
chr1 (71-137)||(6570047-6570113)
chr1 (81-139)||(8062252-8062310)
chr1 (80-139)||(39310857-39310916)
chr1 (70-136)||(39627632-39627699)
chr1 (80-137)||(23378573-23378633)
chr1 (71-125)||(38812802-38812856)
chr1 (71-105)||(43286385-43286419)
chr1 (74-139)||(50079904-50079972)
chr1 (74-124)||(51920496-51920546)
chr1 (80-133)||(3121172-3121225)
chr1 (71-112)||(5057077-5057118)
chr1 (71-124)||(6520774-6520827)
chr1 (71-116)||(10096741-10096786)
chr1 (80-133)||(23576485-23576538)
chr1 (71-124)||(26978111-26978164)
chr1 (71-116)||(29635810-29635855)
chr1 (71-139)||(30288926-30288994)
chr1 (80-117)||(43671760-43671796)
chr1 (71-136)||(47355440-47355505)
chr1 (194-226)||(280978-281010)
chr1 (56-104)||(20357353-20357401)
chr1 (56-104)||(20562554-20562602)
chr1 (80-124)||(25956712-25956756)
chr1 (80-124)||(34050354-34050398)
chr1 (93-137)||(35941106-35941150)
[»] chr7 (42 HSPs)
chr7 (48-224)||(7899525-7899702)
chr7 (97-226)||(26050522-26050653)
chr7 (97-226)||(26059881-26060012)
chr7 (138-224)||(33941029-33941115)
chr7 (52-139)||(19868161-19868249)
chr7 (48-117)||(8420872-8420941)
chr7 (71-139)||(2276722-2276791)
chr7 (48-139)||(12650868-12650959)
chr7 (48-117)||(12624707-12624775)
chr7 (71-139)||(19889388-19889456)
chr7 (71-139)||(23982817-23982886)
chr7 (80-124)||(11680089-11680133)
chr7 (74-133)||(3530179-3530238)
chr7 (82-139)||(24699182-24699240)
chr7 (48-145)||(32117856-32117953)
chr7 (71-139)||(5909344-5909412)
chr7 (71-139)||(12085993-12086061)
chr7 (80-124)||(47707955-47707999)
chr7 (74-117)||(46185376-46185419)
chr7 (74-133)||(47200967-47201026)
chr7 (71-125)||(7040314-7040367)
chr7 (71-113)||(36991062-36991104)
chr7 (82-139)||(39869170-39869228)
chr7 (154-224)||(43265333-43265403)
chr7 (71-139)||(9332009-9332077)
chr7 (80-137)||(42750338-42750395)
chr7 (71-139)||(7170050-7170118)
chr7 (85-133)||(23024777-23024825)
chr7 (70-117)||(27696746-27696793)
chr7 (66-139)||(3561935-3562008)
chr7 (79-117)||(41572289-41572327)
chr7 (71-139)||(384492-384560)
chr7 (80-133)||(33343042-33343095)
chr7 (80-133)||(34270315-34270368)
chr7 (83-124)||(38554301-38554342)
chr7 (80-133)||(46290064-46290117)
chr7 (71-139)||(47120256-47120324)
chr7 (65-113)||(5833429-5833477)
chr7 (88-116)||(8091391-8091419)
chr7 (149-189)||(8257044-8257084)
chr7 (84-112)||(22041801-22041829)
chr7 (80-128)||(24463026-24463074)
[»] chr4 (41 HSPs)
chr4 (90-226)||(27298851-27298988)
chr4 (138-224)||(8153476-8153562)
chr4 (48-132)||(51070435-51070520)
chr4 (139-224)||(49078063-49078148)
chr4 (50-136)||(2096921-2097008)
chr4 (155-224)||(2159224-2159293)
chr4 (48-128)||(1378077-1378157)
chr4 (48-117)||(6875571-6875640)
chr4 (71-139)||(16667446-16667515)
chr4 (74-117)||(33559271-33559314)
chr4 (74-116)||(39796184-39796226)
chr4 (80-117)||(35645072-35645109)
chr4 (66-137)||(7349738-7349809)
chr4 (58-145)||(27756603-27756690)
chr4 (74-117)||(38222356-38222399)
chr4 (70-124)||(49181135-49181189)
chr4 (71-139)||(39539511-39539580)
chr4 (87-124)||(42480000-42480037)
chr4 (80-136)||(44571600-44571656)
chr4 (77-112)||(46607565-46607600)
chr4 (58-124)||(53376457-53376524)
chr4 (86-117)||(55813934-55813965)
chr4 (48-110)||(9326906-9326968)
chr4 (48-110)||(9373628-9373690)
chr4 (48-110)||(9381940-9382002)
chr4 (71-125)||(19450962-19451016)
chr4 (71-125)||(19468256-19468310)
chr4 (71-125)||(24684899-24684953)
chr4 (71-125)||(27019322-27019376)
chr4 (71-136)||(34941328-34941394)
chr4 (70-139)||(36000001-36000070)
chr4 (74-139)||(41415622-41415687)
chr4 (80-133)||(9759213-9759266)
chr4 (71-116)||(13009817-13009862)
chr4 (71-124)||(33632264-33632317)
chr4 (71-124)||(42395469-42395522)
chr4 (80-133)||(50352356-50352409)
chr4 (71-116)||(51691412-51691457)
chr4 (71-124)||(52391361-52391414)
chr4 (71-123)||(19838753-19838805)
chr4 (80-124)||(23545539-23545583)
[»] chr3 (39 HSPs)
chr3 (48-166)||(7940811-7940931)
chr3 (48-124)||(23320133-23320209)
chr3 (48-124)||(23638088-23638164)
chr3 (162-224)||(36476117-36476179)
chr3 (71-139)||(11610962-11611030)
chr3 (49-116)||(15004459-15004526)
chr3 (71-117)||(26486439-26486485)
chr3 (47-124)||(30472928-30473006)
chr3 (56-133)||(14847047-14847124)
chr3 (48-105)||(28992812-28992869)
chr3 (71-139)||(37055428-37055497)
chr3 (48-113)||(37332188-37332252)
chr3 (154-224)||(26903794-26903864)
chr3 (154-224)||(36617176-36617246)
chr3 (82-139)||(53537064-53537122)
chr3 (71-139)||(3863377-3863445)
chr3 (71-116)||(7220187-7220232)
chr3 (71-139)||(13495341-13495410)
chr3 (71-124)||(23803108-23803161)
chr3 (79-139)||(35095003-35095060)
chr3 (66-139)||(40497095-40497168)
chr3 (84-116)||(37702016-37702048)
chr3 (80-116)||(46492279-46492315)
chr3 (71-117)||(2379134-2379180)
chr3 (66-139)||(29686368-29686441)
chr3 (71-125)||(54527768-54527822)
chr3 (80-133)||(2571322-2571375)
chr3 (80-133)||(10307820-10307873)
chr3 (71-104)||(19346181-19346214)
chr3 (80-117)||(24657610-24657647)
chr3 (71-124)||(46492405-46492458)
chr3 (80-133)||(46922833-46922886)
chr3 (80-133)||(48517549-48517602)
chr3 (71-139)||(50364238-50364306)
chr3 (80-117)||(53794834-53794871)
chr3 (80-136)||(13879878-13879934)
chr3 (71-107)||(19966384-19966420)
chr3 (71-115)||(44567948-44567992)
chr3 (89-117)||(49396421-49396449)
[»] chr8 (44 HSPs)
chr8 (48-168)||(7393284-7393404)
chr8 (132-225)||(32160787-32160880)
chr8 (147-217)||(24556303-24556373)
chr8 (48-124)||(20514696-20514772)
chr8 (48-146)||(29642643-29642742)
chr8 (51-133)||(34249730-34249814)
chr8 (48-136)||(34741704-34741792)
chr8 (48-133)||(31133889-31133974)
chr8 (51-139)||(38047979-38048068)
chr8 (156-224)||(2149032-2149100)
chr8 (71-133)||(26682122-26682184)
chr8 (71-139)||(6818064-6818133)
chr8 (71-128)||(35583426-35583482)
chr8 (71-139)||(35678337-35678405)
chr8 (77-117)||(1844628-1844668)
chr8 (66-139)||(14816183-14816256)
chr8 (66-139)||(14829484-14829557)
chr8 (71-133)||(44091372-44091434)
chr8 (154-224)||(45485594-45485664)
chr8 (83-139)||(9801716-9801772)
chr8 (80-113)||(12132057-12132090)
chr8 (71-139)||(13328003-13328071)
chr8 (81-116)||(9022106-9022141)
chr8 (71-118)||(14961725-14961772)
chr8 (82-139)||(4080466-4080524)
chr8 (82-139)||(4084615-4084673)
chr8 (82-139)||(4102922-4102980)
chr8 (48-114)||(26834634-26834700)
chr8 (48-114)||(31812186-31812252)
chr8 (71-125)||(38843766-38843820)
chr8 (83-117)||(44300008-44300042)
chr8 (71-139)||(7140521-7140589)
chr8 (71-139)||(9743909-9743977)
chr8 (71-139)||(10129151-10129219)
chr8 (85-114)||(11923092-11923121)
chr8 (85-114)||(11946971-11947000)
chr8 (80-125)||(16445806-16445851)
chr8 (71-124)||(27874743-27874796)
chr8 (71-124)||(28014920-28014973)
chr8 (77-134)||(44222503-44222559)
chr8 (79-127)||(16694988-16695036)
chr8 (75-138)||(18567482-18567545)
chr8 (74-137)||(40210886-40210949)
chr8 (85-125)||(45006032-45006072)
[»] chr5 (31 HSPs)
chr5 (48-137)||(10665004-10665093)
chr5 (48-139)||(32020023-32020115)
chr5 (71-122)||(18150479-18150530)
chr5 (72-137)||(28629928-28629993)
chr5 (74-132)||(15241015-15241074)
chr5 (157-224)||(17076012-17076079)
chr5 (82-139)||(11636779-11636837)
chr5 (82-139)||(16174694-16174752)
chr5 (48-133)||(33072732-33072818)
chr5 (71-139)||(2795571-2795639)
chr5 (80-133)||(6863610-6863663)
chr5 (71-124)||(26265106-26265159)
chr5 (71-124)||(40166345-40166398)
chr5 (80-117)||(40309498-40309535)
chr5 (71-139)||(8103642-8103710)
chr5 (65-124)||(11692684-11692744)
chr5 (81-124)||(1203092-1203135)
chr5 (82-139)||(5958196-5958254)
chr5 (74-139)||(11376007-11376072)
chr5 (71-139)||(4047460-4047528)
chr5 (71-139)||(9184255-9184323)
chr5 (75-116)||(10658356-10658396)
chr5 (71-116)||(15837346-15837391)
chr5 (80-125)||(18841776-18841821)
chr5 (80-133)||(30839835-30839888)
chr5 (80-133)||(36597633-36597686)
chr5 (85-125)||(3737952-3737992)
chr5 (74-110)||(16161021-16161057)
chr5 (48-139)||(31567530-31567622)
chr5 (64-137)||(32663727-32663802)
chr5 (79-139)||(40512999-40513059)
[»] chr2 (35 HSPs)
chr2 (132-223)||(2631910-2632001)
chr2 (48-145)||(36731221-36731319)
chr2 (71-139)||(27665106-27665174)
chr2 (50-117)||(2544251-2544318)
chr2 (81-128)||(34817602-34817649)
chr2 (74-124)||(9450320-9450370)
chr2 (71-139)||(4821324-4821392)
chr2 (71-139)||(23932612-23932681)
chr2 (71-116)||(35729188-35729233)
chr2 (71-117)||(11660981-11661027)
chr2 (48-114)||(15231904-15231970)
chr2 (50-116)||(45302411-45302477)
chr2 (79-124)||(2051677-2051722)
chr2 (71-139)||(14377472-14377540)
chr2 (71-139)||(19228473-19228541)
chr2 (71-124)||(20566079-20566132)
chr2 (71-139)||(22705502-22705570)
chr2 (71-124)||(29981285-29981338)
chr2 (71-116)||(45062269-45062314)
chr2 (74-137)||(2060107-2060171)
chr2 (48-124)||(15411661-15411737)
chr2 (71-139)||(22162139-22162207)
chr2 (71-141)||(16123324-16123394)
chr2 (154-224)||(4076210-4076280)
chr2 (83-137)||(12438723-12438776)
chr2 (86-136)||(22593303-22593353)
chr2 (74-133)||(25068539-25068602)
chr2 (71-125)||(43806422-43806476)
chr2 (80-133)||(5583629-5583682)
chr2 (67-112)||(6765075-6765120)
chr2 (71-139)||(12016714-12016782)
chr2 (71-139)||(16126621-16126689)
chr2 (71-139)||(16919216-16919284)
chr2 (79-139)||(40562147-40562208)
chr2 (77-113)||(39607476-39607512)
[»] scaffold0009 (2 HSPs)
scaffold0009 (74-138)||(191379-191443)
scaffold0009 (81-139)||(43510-43568)
[»] chr6 (26 HSPs)
chr6 (71-139)||(6016903-6016972)
chr6 (74-139)||(1017843-1017909)
chr6 (71-139)||(22974635-22974703)
chr6 (71-139)||(23813698-23813766)
chr6 (71-114)||(10887102-10887145)
chr6 (70-124)||(8977527-8977581)
chr6 (71-145)||(12454107-12454181)
chr6 (154-224)||(18817556-18817626)
chr6 (82-124)||(29730341-29730383)
chr6 (70-116)||(31039775-31039821)
chr6 (71-116)||(23936438-23936483)
chr6 (70-127)||(30708051-30708108)
chr6 (71-139)||(17596389-17596457)
chr6 (81-133)||(28757558-28757610)
chr6 (70-145)||(30591224-30591300)
chr6 (74-139)||(2830746-2830811)
chr6 (48-122)||(16540669-16540743)
chr6 (154-224)||(24902325-24902395)
chr6 (48-145)||(31790955-31791052)
chr6 (71-139)||(5362955-5363023)
chr6 (80-133)||(14228197-14228250)
chr6 (80-133)||(28943840-28943893)
chr6 (71-116)||(29863364-29863409)
chr6 (71-124)||(30623389-30623442)
chr6 (80-124)||(17141338-17141382)
chr6 (71-110)||(31503818-31503858)
[»] scaffold0149 (1 HSPs)
scaffold0149 (48-124)||(22527-22603)
[»] scaffold0305 (1 HSPs)
scaffold0305 (80-124)||(18067-18111)
[»] scaffold0618 (1 HSPs)
scaffold0618 (71-133)||(8476-8538)
[»] scaffold0073 (1 HSPs)
scaffold0073 (71-125)||(16597-16650)
[»] scaffold0061 (1 HSPs)
scaffold0061 (71-139)||(52841-52909)
[»] scaffold0018 (1 HSPs)
scaffold0018 (71-139)||(182091-182159)
[»] scaffold0017 (1 HSPs)
scaffold0017 (71-139)||(145725-145793)
[»] scaffold0631 (1 HSPs)
scaffold0631 (48-111)||(500-563)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 9516720 - 9516541
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt-caatgaaaagttacttcatttg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9516720 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttttcaatgaaaagttacttcatttg 9516621  T
Q  147 cgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttctc 226  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9516620 cgtatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataatttcttctc 9516541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 35438854 - 35438675
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt-caatgaaaagttacttcatttg 146  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||    
T  35438854 ttaaaatggtaagtttatcttataatttgtgtattttatattaaatatataactttttaataaacaattggtgtttttcaattaaaagttacttcctttg 35438755  T
Q  147 cgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttctc 226  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35438754 ggcatacggtgcatccatattaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttctc 35438675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 43909329 - 43909161
Alignment:
Q  51 aaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt-caatgaaaagttacttcatttgcgc 149  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||| |||||||    
T  43909329 aaatggtaagtttgtcttataacttgtgtattttatattaaatatataactttttaac------ttggtgtttttcaatgaaaagttacttcctttgcgc 43909236  T
Q  150 atacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43909235 atacggtgcatccatatcagacatataaatatcatgcttattgcaaattttaataactttagatataagttcttc 43909161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 13241896 - 13241748
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttacttcatttg 146  Q
    |||||||||||||||| || | |||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||| |||||| |||||| ||||    
T  13241896 ttaaaatggtaagtttgtcgtgtaacttgtgtatttcatattaaatatataattttttaataaataatttgtgtttttcaacgaaaag-tacttcctttg 13241798  T
Q  147 cgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaa 196  Q
    |||||||  ||||| ||||||| |||||||||||||||||||||||||||    
T  13241797 cgcatacaatgcattcatatcaagcacatcaatatcatgcttattgcaaa 13241748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 34912939 - 34913021
Alignment:
Q  138 cttcatttgcgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagtt 220  Q
    |||| ||||| |||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  34912939 cttcctttgcacataaggcgcatccatattaggcacatcaatatcatgcttattgcaaattttaataaccttatatataagtt 34913021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 33048177 - 33048220
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  33048177 ttgtatattttatattaaatatataactttttaataaataattg 33048220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 17919566 - 17919501
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||| ||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||    
T  17919566 ttgtgttttttatattaaatatgtaac-ttttaataaataattgttggttttcaatgaaaagttact 17919501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 39150392 - 39150457
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||| ||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||    
T  39150392 ttgtgttttttatattaaatatgtaac-ttttaataaataattgttggttttcaatgaaaagttact 39150457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 52337882 - 52337836
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  52337882 aacttatgtattttatattaaatatataaatttttaataaataattg 52337836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 281068 - 281012
Alignment:
Q  102 ttttaataaataattggtgtttt-caatgaaaagttacttcatttgcgcatacggtg 157  Q
    |||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||    
T  281068 ttttaataaacaattggtgtttttcaatgaaaaattacttcgtttgcgcatacggtg 281012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 32716225 - 32716299
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttacttcattt 145  Q
    ||||||||| ||||||||||||||| |||| ||| ||| |||||||| | |||||||| |||||||||||||||||    
T  32716225 aacttgtgttttttatattaaatatgtaacattt-aatcaataattgtttgttttcaacgaaaagttacttcattt 32716299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 1016474 - 1016404
Alignment:
Q  154 ggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||| | | |||  ||||||||||||||||    
T  1016474 ggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttc 1016404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 6307618 - 6307565
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||    
T  6307618 aacttgtgtattttctattaa-tatataaatttttaataaataattgttgttttc 6307565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 31100972 - 31101058
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaa 133  Q
    ||||| |||||| |||  |||| |||||||| |||||||||||||||| |  ||||||||||||||| || || |||||||||||||    
T  31100972 ttaaagtggtaactttgacttaaaacttgtgcattttatattaaatatgttgctttttaataaataagtgttgtttttcaatgaaaa 31101058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 1502791 - 1502844
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| |||||||||| ||||    
T  1502791 attttgtattaaatatataactttttgttaaataattgttgttttcaataaaaa 1502844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 23591814 - 23591769
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||    
T  23591814 aacttgtacattttgtattaaatatataactttttaataaataatt 23591769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 30363057 - 30363126
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||||||| ||  |||||||||| |||||| | ||||||||| ||||||||||    
T  30363057 aacttgtgcattttatattaaatatgtaggtttttaataattaattgttggttttcaataaaaagttact 30363126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 36490895 - 36490842
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||  ||||| |||| ||||||||||||||||||||||||||| ||||||    
T  36490895 aacttgtacattttgtatttaatatataactttttaataaataattgttgtttt 36490842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 6754587 - 6754519
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||| ||| ||  |||||||||| |||||| || ||||||| ||||||||||    
T  6754587 aacttgtgcattttatattaattatgtagatttttaataattaattgttggtttcaataaaaagttact 6754519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 24669066 - 24669006
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaat 108  Q
    ||||||| |||| ||| | ||||||||| || |||||||||||||||||||| ||||||||    
T  24669066 ttaaaatagtaaatttatattataacttatgcattttatattaaatatataattttttaat 24669006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 41624945 - 41624877
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||| ||| ||  |||||||||| |||||| || ||||||| ||||||||||    
T  41624945 aacttgtgcattttatattaattatgtagatttttaataattaattgttggtttcaataaaaagttact 41624877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 50467433 - 50467493
Alignment:
Q  57 taagtttctcttataacttgtgtattttatattaaa-tatataactttttaataaataatt 116  Q
    ||||||| ||||  ||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  50467433 taagtttgtcttgaaacttatgtattttatattaaaatatataattttttaataaataatt 50467493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 6570047 - 6570113
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagtta 137  Q
    ||||||||| ||||||||||||||| || | ||||||| |||||||| | ||||||||||||||||||    
T  6570047 aacttgtgttttttatattaaatatgtagc-ttttaatcaataattgttggttttcaatgaaaagtta 6570113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 8062310 - 8062252
Alignment:
Q  81 ttttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||||||||||||  |||||||| |||||||| || |||||||||||||||||||    
T  8062310 ttttatattaaatatatag-tttttaatcaataattgttgattttcaatgaaaagttact 8062252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 39310857 - 39310916
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||| ||||||| |||| ||||||| |||||||||||| ||||||| | |||||||||||    
T  39310857 atttaatattaagtataaaacttttgaataaataattgttgttttccaagaaaagttact 39310916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 39627632 - 39627699
Alignment:
Q  70 taacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagtt 136  Q
    ||||||||| |||||||||||||||| |||||||| ||||| | |||| || |||||||| |||||||    
T  39627632 taacttgtgcattttatattaaatatgtaacttttcaataagtgattgttgtttttcaattaaaagtt 39627699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 23378573 - 23378633
Alignment:
Q  80 attttatattaaatata---taactttttaataaataattggtgttttcaatgaaaagtta 137  Q
    |||||||||||||||||   ||||||||||| ||||||||| | |||||||| ||||||||    
T  23378573 attttatattaaatatagtgtaactttttaacaaataattgttattttcaataaaaagtta 23378633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 38812856 - 38812802
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  38812856 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttc 38812802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 43286385 - 43286419
Alignment:
Q  71 aacttgtgtattttatattaaatatataacttttt 105  Q
    |||||||||||||||| ||||||||||||||||||    
T  43286385 aacttgtgtattttatcttaaatatataacttttt 43286419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 50079972 - 50079904
Alignment:
Q  74 ttgtgtattttatattaaata---tataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||||||||||||||||||||   ||||| ||||||||||||||||  | |||| ||| ||||||||||    
T  50079972 ttgtgtattttatattaaataatatataattttttaataaataattaatttttttaataaaaagttact 50079904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 51920496 - 51920546
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||| ||||| |||||||||||| ||||||| |||||||||||| ||||||    
T  51920496 ttgtatatttaatattaaatataaaacttttgaataaataattgttgtttt 51920546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 3121225 - 3121172
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  3121225 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 3121172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 5057118 - 5057077
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaat 112  Q
    |||||||  ||||||||||||||||||| |||||||||||||    
T  5057118 aacttgtacattttatattaaatatatatctttttaataaat 5057077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 6520827 - 6520774
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||| | |||||| ||||||||| ||| ||||||||||||||||| ||||||    
T  6520827 aacttgcgcattttaaattaaatatttaattttttaataaataattgttgtttt 6520774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 10096741 - 10096786
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||||| ||||| ||||||||||||||| ||||||||||| ||||    
T  10096741 aacttgtctatttaatattaaatatataattttttaataaaaaatt 10096786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 23576485 - 23576538
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  23576485 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 23576538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 26978164 - 26978111
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||| ||||| |||||||||||| || |||| |||||||||||| ||||||    
T  26978164 aacttgtatatttaatattaaatataaaatttttgaataaataattgttgtttt 26978111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 29635810 - 29635855
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||||| |||||| |||| || |||||||||||||||||||||||    
T  29635810 aacttgtatattttgtatttaacatataactttttaataaataatt 29635855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 30288926 - 30288994
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| || | ||||||| |||||||| | |||||||||||||| |||||    
T  30288926 aacttgtgttttttatattaaatatgtagc-ttttaatcaataattgttggttttcaatgaaaaattact 30288994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 43671796 - 43671760
Alignment:
Q  80 attttatattaaatatataactttttaataaataattg 117  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  43671796 attttatattaaatatataac-ttttaataaataattg 43671760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 47355440 - 47355505
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagtt 136  Q
    |||||||  ||||||||||||  ||||| |||||| |||| |||||| |||||||||| |||||||    
T  47355440 aacttgttcattttatattaatgatatacctttttgataagtaattgttgttttcaataaaaagtt 47355505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 281010 - 280978
Alignment:
Q  194 aaattttaataactttagatataagttcttctc 226  Q
    ||||||||||||||||| |||||||||||||||    
T  281010 aaattttaataactttaaatataagttcttctc 280978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 20357401 - 20357353
Alignment:
Q  56 gtaagtttctcttataacttgtgtattttatattaaatatataactttt 104  Q
    |||||||| | ||| ||||||||||||||| ||||||||||||| ||||    
T  20357401 gtaagtttgttttagaacttgtgtattttacattaaatatataaatttt 20357353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 20562554 - 20562602
Alignment:
Q  56 gtaagtttctcttataacttgtgtattttatattaaatatataactttt 104  Q
    |||||||| | ||| ||||||||||||||| ||||||||||||| ||||    
T  20562554 gtaagtttgttttagaacttgtgtattttacattaaatatataaatttt 20562602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 25956756 - 25956712
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||| |||||||||||| ||||||| |||||||||||| ||||||    
T  25956756 atttaatattaaatataaaacttttaaataaataattgttgtttt 25956712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 34050354 - 34050398
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||||| ||||||||| ||||| ||||||||||| ||||||    
T  34050354 attttatatttaatatataattttttgataaataattgttgtttt 34050398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 35941106 - 35941150
Alignment:
Q  93 tatataactttttaataaataattggtgttttcaatgaaaagtta 137  Q
    |||||||||||||||||||||| || |||||| ||| ||||||||    
T  35941106 tatataactttttaataaataaatgttgtttttaataaaaagtta 35941150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 7899525 - 7899702
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt-caatgaaaagttacttcatttg 146  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||| |||     
T  7899525 ttaaaatggtaagtttgtcttataacttgtatattttatattaaatatataacattttaataaattattggtgtttttcaatgaaaaattacttcctttt 7899624  T
Q  147 cgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  7899625 cgcatacggcgcatctatatcaggcacatcaatatcatgcttattgcaatttttaataactttagatgtaagttcttc 7899702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 26050522 - 26050653
Alignment:
Q  97 taactttttaataaataattggtgtttt--caatgaaaagttacttcatttgcgcatacggtgcatccatatcaggcacatcaatatcatgcttattgca 194  Q
    ||||||| ||||||| ||||||||||||  ||||||||||||||||| ||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  26050522 taactttataataaacaattggtgttttttcaatgaaaagttacttcctttgcgcatatagtgcatccatatcacgcacatcaatatcatgcttattgca 26050621  T
Q  195 aattttaataactttagatataagttcttctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  26050622 aattttaataactttagatataagttcttctc 26050653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 26059881 - 26060012
Alignment:
Q  97 taactttttaataaataattggtgtttt--caatgaaaagttacttcatttgcgcatacggtgcatccatatcaggcacatcaatatcatgcttattgca 194  Q
    ||||||| ||||||| ||||||||||||  ||||||||||||||||| ||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  26059881 taactttataataaacaattggtgttttttcaatgaaaagttacttcctttgcgcatatagtgcatccatatcacgcacatcaatatcatgcttattgca 26059980  T
Q  195 aattttaataactttagatataagttcttctc 226  Q
    ||||||||||||||||||||||||||||||||    
T  26059981 aattttaataactttagatataagttcttctc 26060012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 33941115 - 33941029
Alignment:
Q  138 cttcatttgcgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33941115 cttcctttgcgcatatggtgcatccatatcaggcagatcaatatcatgcttattgcaaattttaataaccttagatataagttcttc 33941029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 19868249 - 19868161
Alignment:
Q  52 aatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  19868249 aatggtaagtttgtcttgaaacttgtgtattttatattaaatatataactttttgataaataattggtgtttttcaatgaaaatttact 19868161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 8420872 - 8420941
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  8420872 ttaaaatggtaagtttatcttataacttgtgtcttttatattaaatatacaactttttaataaataattg 8420941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 2276791 - 2276722
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  2276791 aacttgtgtattttatattaaatagataactttttaataaataattggtgtttttcaatgaagagttact 2276722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 12650959 - 12650868
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||||||||||| ||||  |||||  ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  12650959 ttaaaatggtaagtttgtcttgaaacttcagtattttatgttaaa-atataactttttaataaataattggtagttttcaatgaaaagttact 12650868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 12624775 - 12624707
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||    
T  12624775 ttaaaatggtaagtttgtctta-aacttgtgtattttatattaaatatacaagtttttaataaataattg 12624707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 19889456 - 19889388
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||    
T  19889456 aacttgtgttttttatattaaatatgtaac-ttttaataaataattgttggttttcaatgaaaagttact 19889388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 23982817 - 23982886
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||||||||||||||||||| ||| |||||||||| |||||| | ||||| ||||||||||||||    
T  23982817 aacttgtgtattttatattaaatatttaagtttttaataattaattgttggttttgaatgaaaagttact 23982886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 11680089 - 11680133
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  11680089 attttatattaaatatataactttttaataaataattgttgtttt 11680133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 3530179 - 3530238
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||| ||||    
T  3530179 ttgtgcattttatatcaaatatataattttttaataaataattgttgttttcaataaaaa 3530238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 24699240 - 24699182
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||||||||| ||||||| ||||||||||||| || |||||||||||||||||||    
T  24699240 tttatattaaatatgtaactttataataaataattgttgtttttcaatgaaaagttact 24699182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 32117953 - 32117856
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt-caatgaaaagttacttcattt 145  Q
    ||||| ||| |||||| ||||  ||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||| || |||||    
T  32117953 ttaaagtggcaagtttatcttgaaacttgtatattctatattaaatagataactttttaat-aataattggtgttttccaatgcaaagttgctacattt 32117856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 5909344 - 5909412
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| || | |||||||||||||||| | ||||||||||||||||||||    
T  5909344 aacttgtgttttttatattaaatatgtagc-ttttaataaataattgttggttttcaatgaaaagttact 5909412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 12085993 - 12086061
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||| || ||||||| |||||||||||    
T  12085993 aacttgtgttttttatattaaatatttaac-ttttaataaataattgttgattttcaacgaaaagttact 12086061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 47707955 - 47707999
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  47707955 attttgtattaaatatataactttttaataaataattgttgtttt 47707999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 46185419 - 46185376
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    |||||||||| |||||||||||||| ||||||||||||||||||    
T  46185419 ttgtgtatttaatattaaatatatatctttttaataaataattg 46185376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 47201026 - 47200967
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||||||||||||||||||||||||  |||||||||||||||  | |||||||| ||||    
T  47201026 ttgtgtattttatattaaatatataatcttttaataaataatttttattttcaataaaaa 47200967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 7040314 - 7040367
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||    
T  7040314 aacttgtgtattttctattaa-tatataaatttttaataaataattgttgttttc 7040367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 36991062 - 36991104
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaata 113  Q
    |||||||||||||| |||||||||||| |||||||||||||||    
T  36991062 aacttgtgtattttctattaaatatatgactttttaataaata 36991104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 39869228 - 39869170
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||||||||| ||| |||||||||| |||||| | ||||||||||||||||||||    
T  39869228 tttatattaaatatgtaaatttttaataattaattgttggttttcaatgaaaagttact 39869170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 43265403 - 43265333
Alignment:
Q  154 ggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||| | | |||  ||||||||||||||||    
T  43265403 ggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttc 43265333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 9332077 - 9332009
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| ||||  |||||| |||||||| || |||||||||||||||||||    
T  9332077 aacttgtgttttttatattaaatatgtaac-atttaatcaataattgttgattttcaatgaaaagttact 9332009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 42750395 - 42750338
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaagtta 137  Q
    |||||||||||||  | ||||||||||||||||||||  |||||||||| ||||||||    
T  42750395 attttatattaaaattgtaactttttaataaataattattgttttcaataaaaagtta 42750338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 7170118 - 7170050
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||| ||| ||  |||||||||| |||||| || ||||||| ||||||||||    
T  7170118 aacttgtgcattttatattaattatgtagatttttaataattaattgttggtttcaataaaaagttact 7170050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 23024825 - 23024777
Alignment:
Q  85 atattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    |||||||||||||||||||||||||| ||| || |||||||||| ||||    
T  23024825 atattaaatatataactttttaataagtaactgttgttttcaataaaaa 23024777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 27696793 - 27696746
Alignment:
Q  70 taacttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    ||||||||| ||||| ||||||  ||||||||||||||||||||||||    
T  27696793 taacttgtgcattttttattaatgatataactttttaataaataattg 27696746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 3561935 - 3562008
Alignment:
Q  66 cttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||| ||||||||| ||||||||||||||| || | ||||||| |||||||  || |||||||||||||||||||    
T  3561935 cttaaaacttgtgttttttatattaaatatgtagc-ttttaatcaataattattgattttcaatgaaaagttact 3562008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 41572327 - 41572289
Alignment:
Q  79 tattttatattaaatatataactttttaataaataattg 117  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  41572327 tattttgtattaaatatataactttctaataaataattg 41572289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 384492 - 384560
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||| | ||||||||||||||| || ||||| ||| |||||||| || |||||||||||||||||||    
T  384492 aacttgttttttttatattaaatatgtagctttt-aatcaataattgttgattttcaatgaaaagttact 384560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 33343095 - 33343042
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  33343095 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 33343042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 34270368 - 34270315
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  34270368 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 34270315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 38554342 - 38554301
Alignment:
Q  83 ttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||    
T  38554342 ttatattaaatatataaatttttaatatataattgttgtttt 38554301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 46290117 - 46290064
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  46290117 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 46290064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 47120256 - 47120324
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| ||||  |||||| |||||||| | |||||||||||||| |||||    
T  47120256 aacttgtgttttttatattaaatatgtaac-atttaatcaataattgttggttttcaatgaaaaattact 47120324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 5833477 - 5833429
Alignment:
Q  65 tcttataacttgtgtattttatattaaatatataactttttaataaata 113  Q
    ||||| |||||||| ||| |||||||||||| || ||||||||||||||    
T  5833477 tcttagaacttgtgcattctatattaaatatgtagctttttaataaata 5833429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 8091391 - 8091419
Alignment:
Q  88 ttaaatatataactttttaataaataatt 116  Q
    |||||||||||||||||||||||||||||    
T  8091391 ttaaatatataactttttaataaataatt 8091419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 8257044 - 8257084
Alignment:
Q  149 catacggtgcatccatatcaggcacatcaatatcatgctta 189  Q
    |||||||||||||||||| |||||||| |||||||| ||||    
T  8257044 catacggtgcatccatattaggcacataaatatcattctta 8257084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 22041801 - 22041829
Alignment:
Q  84 tatattaaatatataactttttaataaat 112  Q
    |||||||||||||||||||||||||||||    
T  22041801 tatattaaatatataactttttaataaat 22041829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 24463026 - 24463074
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaat 128  Q
    |||||||||||||||| ||  ||||||||||||| ||| ||||||||||    
T  24463026 attttatattaaatatgtagttttttaataaatacttgttgttttcaat 24463074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 27298988 - 27298851
Alignment:
Q  90 aaatatataactttttaataaataattggtgtttt-caatgaaaagttacttcatttgcgcatacggtgcatccatatcaggcacatcaatatcatgctt 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  27298988 aaatatataactttttaataaataattggtgtttttcaatgaaaaattacttcctttgcgcatacggtgcatccatatcagacacatcaatatcatgctt 27298889  T
Q  189 attgcaaattttaataactttagatataagttcttctc 226  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27298888 attgcaaattttaataactttagatataagttcttctc 27298851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 8153476 - 8153562
Alignment:
Q  138 cttcatttgcgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||| |||||||||||||    
T  8153476 cttcttttgcgcatacggtgcatccatatcaagcacatcaatatcatatttattgtaaattttaataactttatatataagttcttc 8153562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 51070435 - 51070520
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaa 132  Q
    |||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  51070435 ttaaaatggtaagtttgttttgtaacttgtgtattttatattaaatatataactttttaataaatgattggtgtttttcaatgaaa 51070520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 49078148 - 49078063
Alignment:
Q  139 ttcatttgcgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    |||| |||| |||| |||||||||| | || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  49078148 ttcacttgcacatatggtgcatccaaaccaagcacatcaatatcatgcttattgcaaatttttataactttagatataagttcttc 49078063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 2097008 - 2096921
Alignment:
Q  50 aaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagtt 136  Q
    |||||||||||||| | ||  |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||    
T  2097008 aaaatggtaagtttgtattggaacttgtgcattttatattaaatatataactttttaataaataattgttgtttttcaataaaaagtt 2096921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 2159224 - 2159293
Alignment:
Q  155 gtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||||||| |||| |||||||| |||||||||||||||||||||||  |||||||||| ||||||    
T  2159224 gtgcatccatatctggcagatcaatattatgcttattgcaaattttaataatcttagatataaattcttc 2159293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 1378157 - 1378077
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaat 128  Q
    |||||||||||| ||| ||||  |||||||  |||| |||||||||||||||| |||||||||||||||| ||||||||||    
T  1378157 ttaaaatggtaaatttatcttgaaacttgtacatttaatattaaatatataacattttaataaataattgatgttttcaat 1378077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 6875640 - 6875571
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    |||||||||| | ||| | ||| ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  6875640 ttaaaatggtcacttttttttaaaacttgtgtattttatattaaatttataacttttcaataaataattg 6875571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 16667446 - 16667515
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||||||||||||||||||| || ||||||||||||||| || || ||||||||||||| |||||    
T  16667446 aacttgtgtattttatattaaatatgtagctttttaataaataagtgttgtttttcaatgaaaaattact 16667515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 33559314 - 33559271
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  33559314 ttgtgtattttatattaaatatataattttttaataaataattg 33559271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 39796184 - 39796226
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  39796184 ttgtgtattttatattaaatatataaatttttaataaataatt 39796226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 35645072 - 35645109
Alignment:
Q  80 attttatattaaatatataactttttaataaataattg 117  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35645072 attttatattaaatatataactttttaataaataattg 35645109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 7349809 - 7349738
Alignment:
Q  66 cttataacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagtta 137  Q
    |||| ||||||||| ||||||||||||||| |||| |||||| ||||||||| | ||||||||||||||||||    
T  7349809 cttaaaacttgtgttttttatattaaatatgtaac-ttttaacaaataattgttggttttcaatgaaaagtta 7349738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 27756690 - 27756603
Alignment:
Q  58 aagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt-caatgaaaagttacttcattt 145  Q
    |||||| ||||  ||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||| || |||||    
T  27756690 aagtttgtcttgaaacttgtatattctatattaaatagataactttttaat-aataattggtgttttccaatgcaaagttgctacattt 27756603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 38222399 - 38222356
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    ||||| |||||||||||||||||||| |||||||||||||||||    
T  38222399 ttgtggattttatattaaatatataattttttaataaataattg 38222356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 49181189 - 49181135
Alignment:
Q  70 taacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||||| |||||||||||||||| |||||||| ||||||| |||| ||||||    
T  49181189 taacttgtgcattttatattaaatatgtaacttttcaataaatgattgttgtttt 49181135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 39539580 - 39539511
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||| |||| ||||||||||| || ||||||||||||||| || || ||||||||||||| |||||    
T  39539580 aacttgtgaatttcatattaaatatgtagctttttaataaataagtgttgtttttcaatgaaaaattact 39539511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 42480000 - 42480037
Alignment:
Q  87 attaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  42480000 attaaatatataactttttaataaataattgatgtttt 42480037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 44571600 - 44571656
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaagtt 136  Q
    |||||||||||||||||||| |||||||||| |||||  |||||| ||| |||||||    
T  44571600 attttatattaaatatataaatttttaataagtaattattgtttttaataaaaagtt 44571656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 46607565 - 46607600
Alignment:
Q  77 tgtattttatattaaatatataactttttaataaat 112  Q
    ||||||||||||||||||||||| ||||||||||||    
T  46607565 tgtattttatattaaatatataattttttaataaat 46607600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 53376457 - 53376524
Alignment:
Q  58 aagtttctcttataacttgtgtattttatattaaat-atataactttttaataaataattggtgtttt 124  Q
    |||||| | ||| ||| |||| |||||||||||||| ||||||||||||||||||| |||| ||||||    
T  53376457 aagtttgtattaaaacctgtgcattttatattaaattatataactttttaataaatgattgttgtttt 53376524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 117
Target Start/End: Complemental strand, 55813965 - 55813934
Alignment:
Q  86 tattaaatatataactttttaataaataattg 117  Q
    ||||||||||||||||||||||||||||||||    
T  55813965 tattaaatatataactttttaataaataattg 55813934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 9326906 - 9326968
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataa 110  Q
    ||||||||  |||||| ||||  |||||||||||| ||||||||||| | |||||||||||||    
T  9326906 ttaaaatgacaagtttatcttggaacttgtgtattctatattaaatagacaactttttaataa 9326968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 9373628 - 9373690
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataa 110  Q
    ||||||||  |||||| ||||  |||||||||||| ||||||||||| | |||||||||||||    
T  9373628 ttaaaatgacaagtttatcttggaacttgtgtattctatattaaatagacaactttttaataa 9373690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 9381940 - 9382002
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataa 110  Q
    ||||||||  |||||| ||||  |||||||||||| ||||||||||| | |||||||||||||    
T  9381940 ttaaaatgacaagtttatcttggaacttgtgtattctatattaaatagacaactttttaataa 9382002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 19450962 - 19451016
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  19450962 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttc 19451016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 19468310 - 19468256
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  19468310 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttc 19468256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 24684953 - 24684899
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  24684953 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttc 24684899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 27019376 - 27019322
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  27019376 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttc 27019322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 34941394 - 34941328
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagtt 136  Q
    |||||||  ||||| |||| ||||||||||||||||||||||| ||| || |||||||| |||||||    
T  34941394 aacttgtacattttgtatttaatatataactttttaataaatagttgttgtttttcaataaaaagtt 34941328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 36000001 - 36000070
Alignment:
Q  70 taacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||||| ||||||||||||||| || | ||||||| |||||||| | ||||||||| ||||||||||    
T  36000001 taacttgtgttttttatattaaatatgtagc-ttttaatcaataattgttggttttcaataaaaagttact 36000070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 41415622 - 41415687
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||| ||||||||||||||| || | |||||||||||||||| || |||||||| ||||||||||    
T  41415622 ttgtgttttttatattaaatatgtagc-ttttaataaataattgttgattttcaattaaaagttact 41415687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 9759213 - 9759266
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  9759213 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 9759266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 13009817 - 13009862
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||||| |||||| ||||||||||||| ||||||| |||||||||    
T  13009817 aacttgtatattttgtattaaatatatagctttttagtaaataatt 13009862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 33632264 - 33632317
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| ||||||    
T  33632264 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgtttt 33632317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 42395469 - 42395522
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||| || ||||||||||||||||||||||||||  ||| |||| |||||||    
T  42395469 aacttgagtcttttatattaaatatataactttttataaaaaaattagtgtttt 42395522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 50352409 - 50352356
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  50352409 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 50352356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 51691457 - 51691412
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||||| ||||||  |||||||||||| |||||||||||||||||    
T  51691457 aacttgtatattttgaattaaatatatagctttttaataaataatt 51691412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 52391414 - 52391361
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| ||||||    
T  52391414 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgtttt 52391361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 19838753 - 19838805
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttt 123  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| |||||    
T  19838753 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgttt 19838805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 23545583 - 23545539
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||| |||||||||||| ||||||| |||||||||||| ||||||    
T  23545583 atttaatattaaatataaaacttttgaataaataattgttgtttt 23545539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 7940931 - 7940811
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg--ttttcaatgaaaagttacttcattt 145  Q
    |||||||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||| ||||    
T  7940931 ttaaaatggtaaatttgtcttgtaacttctgtattttatattaaatatataactttttaataaataattagtgttttttcaatgaaaagttactttattt 7940832  T
Q  146 gcgcatacggtgcatccatat 166  Q
    | |||| ||||||||||||||    
T  7940831 gtgcatgcggtgcatccatat 7940811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 23320209 - 23320133
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||||||| ||| ||||  |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  23320209 ttaaaatggtaaatttgtcttgaaactcgtgtattttatattaaatatatatctttttaataaataattgatgtttt 23320133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 23638088 - 23638164
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||||||||||  ||||  |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  23638088 ttaaaatggtaagttagtcttgaaacttgtgtattttatattaaatatacaactttttattaaataattgatgtttt 23638164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 36476117 - 36476179
Alignment:
Q  162 catatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    |||||||  ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  36476117 catatcaaacacatcaatatcatgtttattgtaaattttaataaccttagatataagttcttc 36476179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 11611030 - 11610962
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||    
T  11611030 aacttgtgttttttatattaaatatgtaac-ttttaataaataattgttggttttcaatgaaaagttact 11610962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 15004459 - 15004526
Alignment:
Q  49 taaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||||||||| ||| ||||| ||||||  | ||||||||||||| ||||||||||||||||||||||    
T  15004459 taaaatggtaaatttatcttaaaacttgaatcttttatattaaatgtataactttttaataaataatt 15004526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 26486439 - 26486485
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  26486439 aacttgtgtattttatattaaatatatagttttttaataaataattg 26486485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 30472928 - 30473006
Alignment:
Q  47 cttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataac-tttttaataaataattggtgtttt 124  Q
    ||||| || |||||||| | ||||||||||||||||||||||||||| |||| | |||||||||||| |||| ||||||    
T  30472928 cttaatatagtaagtttgtattataacttgtgtattttatattaaatgtatatcttttttaataaatgattgttgtttt 30473006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 14847047 - 14847124
Alignment:
Q  56 gtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    |||||||| | || |||||||||||||||||||| ||||||||| |||| |||||||||||  || ||||||| ||||    
T  14847047 gtaagtttgtattgtaacttgtgtattttatattgaatatataaattttaaataaataattattggtttcaataaaaa 14847124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 28992812 - 28992869
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataacttttt 105  Q
    |||||||| ||||||| ||||| || |||||||||||||||||||| |||||||||||    
T  28992812 ttaaaatgataagtttatcttaaaatttgtgtattttatattaaatgtataacttttt 28992869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 37055428 - 37055497
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||| |  ||||||||| |||||||||    
T  37055428 aacttgtgttttttatattaactataaaactttttaataaataattgttctttttcaatgtaaagttact 37055497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 37332252 - 37332188
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaata 113  Q
    |||||||||||||||| ||||  || |||||||||||||||||||||||||| ||||| |||||||    
T  37332252 ttaaaatggtaagtttgtctttaaatttgtgtattttatattaaatatataa-tttttcataaata 37332188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 26903794 - 26903864
Alignment:
Q  154 ggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||| | | |||  ||||||||||||||||    
T  26903794 ggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttc 26903864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 36617246 - 36617176
Alignment:
Q  154 ggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||| | | |||  ||||||||||||||||    
T  36617246 ggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttc 36617176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 53537064 - 53537122
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||||| |||| |||||||||||||||||||| || ||||||||| |||||||||    
T  53537064 tttatattaactataaaactttttaataaataattgttgtttttcaatgtaaagttact 53537122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 3863445 - 3863377
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| || | ||||||| |||||||| || |||||||||||||||||||    
T  3863445 aacttgtgttttttatattaaatatgtagc-ttttaatcaataattgctgattttcaatgaaaagttact 3863377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 7220232 - 7220187
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||    
T  7220232 aacttgtgtatttgatattaaatatatatctttttagtaaataatt 7220187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 13495410 - 13495341
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||||||| ||  ||||||||||||||||| || |||||||| |||| |||||    
T  13495410 aacttgtgcattttatattaaatatgtaggtttttaataaataattgttgattttcaataaaaaattact 13495341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 23803108 - 23803161
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||| ||||| |||||||||||| ||||||| |||||||||||| ||||||    
T  23803108 aacttgtatatttcatattaaatataaaacttttgaataaataattgttgtttt 23803161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 35095060 - 35095003
Alignment:
Q  79 tattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||||||||||||||||| ||||||||||||||| ||  || |||||||||||||||||||    
T  35095060 tattttatattaaatatacaactttttaataaatgat--gt-ttttcaatgaaaagttact 35095003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 40497168 - 40497095
Alignment:
Q  66 cttataacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||| |||||||| |||||||||||| ||| ||  |||||||||| |||||| || ||||||| ||||||||||    
T  40497168 cttagaacttgtgcattttatattaactatgtagatttttaataattaattgttgatttcaataaaaagttact 40497095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 37702016 - 37702048
Alignment:
Q  84 tatattaaatatataactttttaataaataatt 116  Q
    |||||||||||||||||||||||||||||||||    
T  37702016 tatattaaatatataactttttaataaataatt 37702048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 46492279 - 46492315
Alignment:
Q  80 attttatattaaatatataactttttaataaataatt 116  Q
    ||||| |||||||||||||||||||||||||||||||    
T  46492279 attttgtattaaatatataactttttaataaataatt 46492315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 2379134 - 2379180
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    ||||||| |||||| |||| ||||||| |||||||||||||||||||    
T  2379134 aacttgtatattttgtatttaatatatgactttttaataaataattg 2379180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 29686441 - 29686368
Alignment:
Q  66 cttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||| ||||||||| |||||||||| ||||||| ||||| |||||||||||| || | |||| ||||||||||||    
T  29686441 cttagaacttgtgttttttatattacatatatagctttt-aataaataattgttgatattcagtgaaaagttact 29686368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 54527768 - 54527822
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  54527768 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttc 54527822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 2571375 - 2571322
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  2571375 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 2571322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 10307873 - 10307820
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  10307873 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 10307820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 19346214 - 19346181
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttt 104  Q
    ||||||||||||||||||||||||||||| ||||    
T  19346214 aacttgtgtattttatattaaatatataaatttt 19346181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 24657647 - 24657610
Alignment:
Q  80 attttatattaaatatataactttttaataaataattg 117  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  24657647 attttatattaaatatataaaattttaataaataattg 24657610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 46492405 - 46492458
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||  ||||| ||||||||||||||||  |||||||||||||| ||||||    
T  46492405 aacttgtacattttgtattaaatatataactcgttaataaataattgttgtttt 46492458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 46922833 - 46922886
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    |||||||||||| || |||| ||||||||||||| ||| |||||||||| ||||    
T  46922833 attttatattaagtacataattttttaataaatagttgttgttttcaataaaaa 46922886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 48517549 - 48517602
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    |||||||||||||||||||| ||| ||||||||||||  |||||| ||| ||||    
T  48517549 attttatattaaatatataattttataataaataattattgttttaaataaaaa 48517602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 50364306 - 50364238
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| ||||||| |||||||| | ||||||||| | ||||||||    
T  50364306 aacttgtgttttttatattaaatatgtaac-ttttaatcaataattgttggttttcaattataagttact 50364238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 53794871 - 53794834
Alignment:
Q  80 attttatattaaatatataactttttaataaataattg 117  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  53794871 attttatattaaatatgtaactttttaataaattattg 53794834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 13879878 - 13879934
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaagtt 136  Q
    |||| ||||||||||| ||  |||||||||||||||||  ||||||||| |||||||    
T  13879878 atttaatattaaatatgtatatttttaataaataattgtggttttcaataaaaagtt 13879934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 19966384 - 19966420
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaa 107  Q
    |||||||| |||||| |||||||||||||||||||||    
T  19966384 aacttgtgcattttacattaaatatataactttttaa 19966420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 44567992 - 44567948
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataat 115  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||    
T  44567992 aacttgtgccttttacattaaatatataactttttaataattaat 44567948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 49396449 - 49396421
Alignment:
Q  89 taaatatataactttttaataaataattg 117  Q
    |||||||||||||||||||||||||||||    
T  49396449 taaatatataactttttaataaataattg 49396421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 7393284 - 7393404
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttacttcatttg 146  Q
    ||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||||| ||||    
T  7393284 ttaaaatagtaa-tttgtcttgtaacttgtgtattttatattaaatatataactttttaataaataattggtgtttttcaacgaaaaactacttcctttg 7393382  T
Q  147 cgcatacggtgcatccatatca 168  Q
     |||||||||||||||||||||    
T  7393383 tgcatacggtgcatccatatca 7393404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 32160880 - 32160787
Alignment:
Q  132 aagttacttcatttgcgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttct 225  Q
    ||||| |||| |||||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32160880 aagtttcttcctttgcgcatatgttgcatccataccaggcacatctatatcatgcttattgcaaattttaataactttagatataagtttttct 32160787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 24556373 - 24556303
Alignment:
Q  147 cgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataa 217  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |||||    
T  24556373 cgcatacggtgcatccatatccggcacatcaatatcatccttattgcaaattttaataaccttaggtataa 24556303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 20514772 - 20514696
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||||||||||| ||||  |||||||  |||||||||||||||||||||||||||||||||||||||| ||||    
T  20514772 ttaaaatggtaagtttgtcttggaacttgtacattttatattaaatatataactttttaataaataattggtatttt 20514696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 29642742 - 29642643
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtatttt-atattaaatatataactttttaataaataattggtgtttt-caatgaaaagttacttcattt 145  Q
    |||||||||||||||| ||||  ||||||||| |||| |||||||||| | ||||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  29642742 ttaaaatggtaagtttgtcttgaaacttgtgtttttttatattaaatagacaactttttaataa-taattggtgtttttcaatgaaaagttactacattt 29642644  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 34249814 - 34249730
Alignment:
Q  51 aaatggtaagtttctcttataacttgtgtattttatattaaatatataac-tttttaataaataattggtg-ttttcaatgaaaa 133  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||    
T  34249814 aaatggtaagtttgtcttggaacttgtgtattttatattaaatatttaacttttttaataaataattagtgtttttcaatgaaaa 34249730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 34741704 - 34741792
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagtt 136  Q
    |||||||  ||||||| | ||| |||||||| |||||||||||||||||||| ||||||||||||||||  |||||||||| |||||||    
T  34741704 ttaaaataataagtttgtattagaacttgtgcattttatattaaatatataattttttaataaataattattgttttcaattaaaagtt 34741792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 31133974 - 31133889
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaa 133  Q
    |||||||||||  ||| ||||  ||| |||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  31133974 ttaaaatggtatatttatcttgaaacctgtgtattttatattaaatata-aactttttaataaataatttgtgtttttcaatgaaaa 31133889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 38047979 - 38048068
Alignment:
Q  51 aaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgttt-tcaatgaaaagttact 139  Q
    ||||||||| ||| ||||  || ||||||||||||| ||||||||| |  ||||||||||||||||||||||| | ||||||||||||||    
T  38047979 aaatggtaactttgtcttggaatttgtgtattttatcttaaatatacatttttttaataaataattggtgtttgtgaatgaaaagttact 38048068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 2149032 - 2149100
Alignment:
Q  156 tgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    |||||||||| |||||| |||||||||||||||||||||||||| || |||  || |||||||||||||    
T  2149032 tgcatccataacaggcatatcaatatcatgcttattgcaaatttcaacaaccctaaatataagttcttc 2149100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 26682184 - 26682122
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    |||||||| |||||||||||||| | || |||||||||||||||||| |||||||||| ||||    
T  26682184 aacttgtgcattttatattaaatgtgtagctttttaataaataattgttgttttcaataaaaa 26682122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 6818133 - 6818064
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||| |  ||||||||| |||||||||    
T  6818133 aacttgtgcattttatattaactataaaactttttaataaataattgttctttttcaatgtaaagttact 6818064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 35583482 - 35583426
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaat 128  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||    
T  35583482 aacttgtgtattttgtattaaatatataa-tttttaacaaataattgttgttttcaat 35583426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 35678337 - 35678405
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||||||| ||||||||||| ||| |||||||||| |||||| | ||||||||||||||||||||    
T  35678337 aacttgtgtattt-atattaaatatgtaaatttttaataattaattgttggttttcaatgaaaagttact 35678405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 1844628 - 1844668
Alignment:
Q  77 tgtattttatattaaatatataactttttaataaataattg 117  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  1844628 tgtattttatattaaatatttaactttttaataaataattg 1844668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 14816183 - 14816256
Alignment:
Q  66 cttataacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||| ||||||||||||| ||||||||||| ||| |||||||||| |||||| | ||||||||| ||||||||||    
T  14816183 cttaaaacttgtgtattt-atattaaatatgtaaatttttaataattaattgttggttttcaataaaaagttact 14816256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 14829557 - 14829484
Alignment:
Q  66 cttataacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||| ||||||||||||| ||||||||||| ||| |||||||||| |||||| | ||||||||| ||||||||||    
T  14829557 cttaaaacttgtgtattt-atattaaatatgtaaatttttaataattaattgttggttttcaataaaaagttact 14829484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 44091434 - 44091372
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    |||||||| |||||||||||||| | ||  ||||||||||||||||| |||||||||| ||||    
T  44091434 aacttgtgcattttatattaaatttgtagttttttaataaataattgttgttttcaataaaaa 44091372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 45485664 - 45485594
Alignment:
Q  154 ggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||| | | |||  ||||||||||||||||    
T  45485664 ggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttc 45485594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 9801772 - 9801716
Alignment:
Q  83 ttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||    
T  9801772 ttatattaaatatataac-ttttaatcaataattgttgattttcaatgaaaagttact 9801716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 12132090 - 12132057
Alignment:
Q  80 attttatattaaatatataactttttaataaata 113  Q
    ||||||||||||||||||||||||||||||||||    
T  12132090 attttatattaaatatataactttttaataaata 12132057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 13328003 - 13328071
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| ||||  |||||| |||||||| | ||||||||||||||||||||    
T  13328003 aacttgtgttttttatattaaatatgtaac-atttaatcaataattgttggttttcaatgaaaagttact 13328071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 9022141 - 9022106
Alignment:
Q  81 ttttatattaaatatataactttttaataaataatt 116  Q
    |||| |||||||||||||||||||||||||||||||    
T  9022141 ttttttattaaatatataactttttaataaataatt 9022106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 14961725 - 14961772
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattgg 118  Q
    |||||||| |||||| ||||||||| |||||||||||||||| |||||    
T  14961725 aacttgtgcattttaaattaaatatttaactttttaataaatgattgg 14961772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 4080466 - 4080524
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||||||||| ||| |||||| ||| |||||| | ||||||||||||||||||||    
T  4080466 tttatattaaatatgtaaatttttagtaattaattgttagttttcaatgaaaagttact 4080524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 4084615 - 4084673
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||||||||| ||| |||||| ||| |||||| | ||||||||||||||||||||    
T  4084615 tttatattaaatatgtaaatttttagtaattaattgttagttttcaatgaaaagttact 4084673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 4102922 - 4102980
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||||||||| ||| |||||| ||| |||||| | ||||||||||||||||||||    
T  4102922 tttatattaaatatgtaaatttttagtaattaattgttagttttcaatgaaaagttact 4102980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 26834700 - 26834634
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataa 114  Q
    |||||||||||| |||  |||  |||||||| |||| ||||||||||| || |||||||||||||||    
T  26834700 ttaaaatggtaattttgacttggaacttgtgcatttcatattaaatatgtagctttttaataaataa 26834634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 31812252 - 31812186
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataa 114  Q
    |||||||||||| |||  |||  |||||||| |||| ||||||||||| || |||||||||||||||    
T  31812252 ttaaaatggtaattttgacttggaacttgtgcatttcatattaaatatgtagctttttaataaataa 31812186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 38843820 - 38843766
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  38843820 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttc 38843766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 44300042 - 44300008
Alignment:
Q  83 ttatattaaatatataactttttaataaataattg 117  Q
    |||||||| ||||||||||||||||||||||||||    
T  44300042 ttatattatatatataactttttaataaataattg 44300008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 7140521 - 7140589
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| | | |||||||| |||||||| | ||||||||| ||||||||||    
T  7140521 aacttgtgttttttatattaaatatgt-agtttttaatcaataattgttggttttcaataaaaagttact 7140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 9743977 - 9743909
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||| ||| ||||||||||||||| |||| |||||||||||||||| | ||||||||| |||| |||||    
T  9743977 aacttatgttttttatattaaatatgtaac-ttttaataaataattgttggttttcaataaaaaattact 9743909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 10129219 - 10129151
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| || | ||||||| |||||||| | |||||||||||||| |||||    
T  10129219 aacttgtgttttttatattaaatatgtagc-ttttaatcaataattgttggttttcaatgaaaaattact 10129151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 11923121 - 11923092
Alignment:
Q  85 atattaaatatataactttttaataaataa 114  Q
    ||||||||||||||||||||||||||||||    
T  11923121 atattaaatatataactttttaataaataa 11923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 11946971 - 11947000
Alignment:
Q  85 atattaaatatataactttttaataaataa 114  Q
    ||||||||||||||||||||||||||||||    
T  11946971 atattaaatatataactttttaataaataa 11947000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 16445806 - 16445851
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  16445806 atttaatattaaatataaaacttttgaataaataattgttgttttc 16445851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 27874743 - 27874796
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| ||||||    
T  27874743 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgtttt 27874796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 28014920 - 28014973
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| ||||||    
T  28014920 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgtttt 28014973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 44222503 - 44222559
Alignment:
Q  77 tgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaag 134  Q
    |||||||||||| |||||||||  ||||||||||||||||| |||||| ||| |||||    
T  44222503 tgtattttatat-aaatatatacatttttaataaataattgttgtttttaataaaaag 44222559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 16695036 - 16694988
Alignment:
Q  79 tattttatattaaatatataactttttaataaataattggtgttttcaa 127  Q
    |||||||||||||||| |||| |||||||||| |||| | |||||||||    
T  16695036 tattttatattaaataaataaatttttaataagtaatcgttgttttcaa 16694988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 18567482 - 18567545
Alignment:
Q  75 tgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttac 138  Q
    ||||| ||||||||||||||| |||| ||| ||| |||||||| || ||||||||||||||||||    
T  18567482 tgtgttttttatattaaatatgtaacattt-aatcaataattgttggttttcaatgaaaagttac 18567545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 40210886 - 40210949
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagtta 137  Q
    |||||| ||||||||||||||| ||||  |||||| |||||||| | ||||||||||||||||||    
T  40210886 ttgtgttttttatattaaatatgtaac-atttaatcaataattgttggttttcaatgaaaagtta 40210949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 45006072 - 45006032
Alignment:
Q  85 atattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||||||| ||||||| |||||||||||| |||||||    
T  45006072 atattaaatataaaacttttgaataaataattgttgttttc 45006032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 10665004 - 10665093
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagtta 137  Q
    |||||||||||||||| ||||  ||||||||||||  ||||||||| ||||||||||||||||||||||  | |||||||||||||||||    
T  10665004 ttaaaatggtaagtttgtcttggaacttgtgtattgcatattaaatttataactttttaataaataattaatattttcaatgaaaagtta 10665093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 32020023 - 32020115
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||||||||||| ||||  |||||||||||| ||||||||||| |||||||||| |  |||||| |||| ||||||| |||||||||||    
T  32020023 ttaaaatggtaagtttgtcttggaacttgtgtattctatattaaatagataacttttttaataataatcggtgtttttcaaagaaaagttact 32020115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 18150530 - 18150479
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtt 122  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  18150530 aacttgtatattttgtattaaatatataacattttaataaataattggtgtt 18150479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 28629993 - 28629928
Alignment:
Q  72 acttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagtta 137  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||    
T  28629993 acttgtgttttttatattaaatatgtaac-ttttaataaataattgttggttttcaatgaaaagtta 28629928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 15241015 - 15241074
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaa 132  Q
    ||||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  15241015 ttgtgcatgttatattaaatatataattttttaataaataattgttgtttttcaatgaaa 15241074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 17076079 - 17076012
Alignment:
Q  157 gcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    |||||||||||||| |||||||||||||| ||| |||||||||| | |||  |||||||||| |||||    
T  17076079 gcatccatatcaggtacatcaatatcatgtttagtgcaaattttcacaaccctagatataaggtcttc 17076012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 11636837 - 11636779
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||||||||| ||| |||||||||| |||||| | ||||||||||||||||||||    
T  11636837 tttatattaaatatgtaaatttttaataattaattgttggttttcaatgaaaagttact 11636779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 16174694 - 16174752
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||||||||| ||| |||||||||| |||||| | ||||||||||||||||||||    
T  16174694 tttatattaaatatgtaagtttttaataattaattgttggttttcaatgaaaagttact 16174752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 33072818 - 33072732
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgt-tttcaatgaaaa 133  Q
    |||||||| | | ||| ||||| ||||| |||||||||| ||||||||||| ||||| |||||||||||| ||| ||||||| ||||    
T  33072818 ttaaaatgttgattttgtcttagaacttctgtattttatgttaaatatatagcttttcaataaataattgatgtctttcaataaaaa 33072732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 2795639 - 2795571
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||| |||| |||||||||| |||||||| ||| |||||||| || |||||||||||||||||||    
T  2795639 aacttgtgttttttgtattaaatatgtaactttt-aatcaataattgttggttttcaatgaaaagttact 2795571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 6863663 - 6863610
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||| |||||||||| || ||||||| ||||    
T  6863663 attttgtattaaatatataactttttattaaataattgttggtttcaataaaaa 6863610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 26265106 - 26265159
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||| ||||| |||||||||||| ||||||| |||||||||||| ||||||    
T  26265106 aacttgtatatttaatattaaatataaaacttttaaataaataattgttgtttt 26265159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 40166398 - 40166345
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||  ||||| |||||||||||||||||||| ||||||||||| ||||||    
T  40166398 aacttgtacattttgtattaaatatataactttttgataaataattgttgtttt 40166345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 40309498 - 40309535
Alignment:
Q  80 attttatattaaatatataactttttaataaataattg 117  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  40309498 attttatattaaatatataactttttaataaattattg 40309535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 8103642 - 8103710
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||| ||| ||  |||||||||| |||||| || ||||||| ||||||||||    
T  8103642 aacttgtgcattttatattaattatgtagatttttaataattaattgttggtttcaataaaaagttact 8103710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 11692684 - 11692744
Alignment:
Q  65 tcttataacttgtgtattttatattaaatatat-aactttttaataaataattggtgtttt 124  Q
    ||||| ||||||||||||||||| ||| ||||| ||| |||||||||||||||| ||||||    
T  11692684 tcttaaaacttgtgtattttataataattatataaaccttttaataaataattgatgtttt 11692744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 1203092 - 1203135
Alignment:
Q  81 ttttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||    
T  1203092 ttttatataaaatatataactttttaataagtaattgttgtttt 1203135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 5958196 - 5958254
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||||||||| ||| |||||||||| |||||| || ||||||||||||| |||||    
T  5958196 tttatattaaatatgtaaatttttaataattaattgttgattttcaatgaaaaattact 5958254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 11376072 - 11376007
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||| ||||||||||||||| || ||||| |||||||||||  || |||||||||||||||||||    
T  11376072 ttgtgttttttatattaaatatgtagctttt-aataaataattattgattttcaatgaaaagttact 11376007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 4047528 - 4047460
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| || | ||||||| || ||||| | ||||||||||||||||||||    
T  4047528 aacttgtgttttttatattaaatatgtagc-ttttaatcaacaattgttggttttcaatgaaaagttact 4047460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 9184323 - 9184255
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| | | |||||||| |||||||  | ||||||||||||||||||||    
T  9184323 aacttgtgttttttatattaaatatgt-agtttttaatcaataattattggttttcaatgaaaagttact 9184255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 10658356 - 10658396
Alignment:
Q  75 tgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  10658356 tgtgtattttatattaaatatataa-tttttaataaagaatt 10658396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 15837391 - 15837346
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    |||||||| |||||||||||||||||  || |||||||||||||||    
T  15837391 aacttgtgcattttatattaaatataatacattttaataaataatt 15837346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 18841776 - 18841821
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  18841776 atttaatattaaatataaaacttttgaataaataattgttgttttc 18841821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 30839888 - 30839835
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  30839888 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 30839835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 36597686 - 36597633
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  36597686 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 36597633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 3737952 - 3737992
Alignment:
Q  85 atattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||||||| ||||||| |||||||||||| |||||||    
T  3737952 atattaaatataaaacttttgaataaataattgttgttttc 3737992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 16161057 - 16161021
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataa 110  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  16161057 ttgtgtattttatattaaaaatataacttttcaataa 16161021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 31567530 - 31567622
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||||||| ||| ||||  || ||||  |||||||||||||||| ||  |||||||| |||||||  || |||||||| ||||||||||    
T  31567530 ttaaaatggtaattttgtcttgaaatttgttcattttatattaaatatgtagttttttaatgaataattattgtttttcaataaaaagttact 31567622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 32663727 - 32663802
Alignment:
Q  64 ctcttataacttgtgtattttatat--taaatatataactttttaataaataattggtgttttcaatgaaaagtta 137  Q
    |||||| |||||||||||||||| |   ||||| |||| ||||||||| || |||| |||||||||| ||||||||    
T  32663727 ctcttagaacttgtgtattttatgtgaaaaatacataattttttaatagatgattgttgttttcaataaaaagtta 32663802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 40513059 - 40512999
Alignment:
Q  79 tattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||||| ||| ||||||||||||||||  |||||||||| || ||||||| |||| |||||    
T  40513059 tattttgtatcaaatatataactttttgttaaataattgttgatttcaataaaaacttact 40512999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 2631910 - 2632001
Alignment:
Q  132 aagttacttcatttgcgcatacggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttctt 223  Q
    ||||| |||||||| |||||||||||| | ||||||| ||||||||||||||| | |||||||||||| |||||| ||| ||||||||||||    
T  2631910 aagtttcttcatttacgcatacggtgctttcatatcaagcacatcaatatcatacatattgcaaatttcaataaccttatatataagttctt 2632001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 36731319 - 36731221
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttacttcattt 145  Q
    |||||||||||| ||| ||||| |||||||||||| ||||||||||| |||| ||||| |  ||||||| ||| ||||||||||||||||||| |||||    
T  36731319 ttaaaatggtaaatttgtcttagaacttgtgtattctatattaaatagataatttttttaataataattagtgtttttcaatgaaaagttactacattt 36731221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 27665106 - 27665174
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||    
T  27665106 aacttgtgttttttatattaaatatgtaac-ttttaataaataattgttggttttcaatgaaaagttact 27665174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 2544251 - 2544318
Alignment:
Q  50 aaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    ||||| |||||||| | ||| ||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  2544251 aaaatagtaagtttgtattaaaacttgtgtattttatatttaatgtataattttttaataaataattg 2544318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 34817649 - 34817602
Alignment:
Q  81 ttttatattaaatatataactttttaataaataattggtgttttcaat 128  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  34817649 ttttttattaaatatataactttttaataaataattgttgttttcaat 34817602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 9450370 - 9450320
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  9450370 ttgtgtattttctattaaatatataattttttaataaataattgttgtttt 9450320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 4821392 - 4821324
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| || | |||||||||||||||| | ||||||||||||||||||||    
T  4821392 aacttgtgttttttatattaaatatgtagc-ttttaataaataattgttggttttcaatgaaaagttact 4821324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 23932681 - 23932612
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||| |  ||||||||| |||||||||    
T  23932681 aacttgtgcattttatattaactataaaactttttaataaataattgttctttttcaatgtaaagttact 23932612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 35729233 - 35729188
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  35729233 aacttgtgtattttatagtaaatatataaatttttaataaataatt 35729188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 11660981 - 11661027
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattg 117  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||    
T  11660981 aacttgtatattttgtattaaatgtataactttttaataaataattg 11661027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 15231970 - 15231904
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataa 114  Q
    ||||| |||||| |||  |||| |||||||| |||| ||||||||||| ||||||||||||||||||    
T  15231970 ttaaagtggtaactttgacttaaaacttgtgcatttcatattaaatatgtaactttttaataaataa 15231904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 45302477 - 45302411
Alignment:
Q  50 aaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||| |||||||| | ||| || || || |||||||||||||||||||| ||||||||||||||||    
T  45302477 aaaatagtaagtttgtattagaatttatgcattttatattaaatatataattttttaataaataatt 45302411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 2051722 - 2051677
Alignment:
Q  79 tattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  2051722 tattttatattaaatatttaaatttttaataaataattgttgtttt 2051677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 14377540 - 14377472
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| |||||| ||||||||| | ||||||||| ||||||||||    
T  14377540 aacttgtgttttttatattaaatatgtaac-ttttaacaaataattgttggttttcaataaaaagttact 14377472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 19228541 - 19228473
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||| |||| |||||||||| |||||||| ||| |||||||| || |||||||||||||||||||    
T  19228541 aacttgtgttttttgtattaaatatgtaactttt-aatcaataattgttggttttcaatgaaaagttact 19228473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 20566079 - 20566132
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||||||||| ||||||||| ||||  |||||||||||||||| ||||||    
T  20566079 aacttgtgtattttttattaaatagataatattttaataaataattgttgtttt 20566132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 22705570 - 22705502
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| ||| ||| |||||||| | ||||||||||||||||||||    
T  22705570 aacttgtgttttttatattaaatatgtaac-tttaaattaataattgttggttttcaatgaaaagttact 22705502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 29981285 - 29981338
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||||||||| ||||||||||| ||  ||||||||||||||||| ||||||    
T  29981285 aacttgtgtatttaatattaaatatgtatatttttaataaataattgttgtttt 29981338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 45062314 - 45062269
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    |||||||| ||||||||||||| || ||||||||||||||||||||    
T  45062314 aacttgtgcattttatattaaacatgtaactttttaataaataatt 45062269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 2060107 - 2060171
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagtta 137  Q
    |||||| ||||||||||||||| || || ||||||||||||||| || |||| ||||||||||||    
T  2060107 ttgtgtcttttatattaaatatgtagctctttaataaataattgttgatttttaatgaaaagtta 2060171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 15411661 - 15411737
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||| |||| ||| ||||  |||||||  |||||||||||||||| || ||||||||||||| |||| ||||||    
T  15411661 ttaaaatagtaactttgtcttgaaacttgttcattttatattaaatatgtagctttttaataaattattgttgtttt 15411737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 22162139 - 22162207
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||| ||| ||  |||||||||| |||||| || ||||||| ||||||||||    
T  22162139 aacttgtgcattttatattaactatgtagatttttaataattaattgttggtttcaataaaaagttact 22162207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 16123394 - 16123324
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttacttc 141  Q
    ||||||||| ||||||||||||||| |||| ||| ||| || ||||| | ||||||||||||||||||||||    
T  16123394 aacttgtgttttttatattaaatatgtaacattt-aatcaacaattgtttgttttcaatgaaaagttacttc 16123324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 4076210 - 4076280
Alignment:
Q  154 ggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||| | | |||  |||||||||| |||||    
T  4076210 ggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataaggtcttc 4076280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 12438723 - 12438776
Alignment:
Q  83 ttatattaaatatataactttttaataaataattggtgttttcaatgaaaagtta 137  Q
    ||||||||||||||||  ||||||||||||||||| || ||| ||||||||||||    
T  12438723 ttatattaaatatatag-tttttaataaataattgttggttttaatgaaaagtta 12438776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 22593303 - 22593353
Alignment:
Q  86 tattaaatatataactttttaataaataattggtgttttcaatgaaaagtt 136  Q
    |||||||||| || |||||||||||| ||||| |||||||||| |||||||    
T  22593303 tattaaatatgtatctttttaataaacaattgttgttttcaataaaaagtt 22593353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 25068539 - 25068602
Alignment:
Q  74 ttgtgtattttatattaaa----tatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    |||||||||||||||||||    ||||||| ||||||||||||||||| | |||||||| ||||    
T  25068539 ttgtgtattttatattaaataaatatataattttttaataaataattgtttttttcaataaaaa 25068602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 43806476 - 43806422
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  43806476 aacttgtacatttaatattaaatataaaacttttgaataaataattgttgttttc 43806422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 5583629 - 5583682
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  5583629 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 5583682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 6765120 - 6765075
Alignment:
Q  67 ttataacttgtgtattttatattaaatatataactttttaataaat 112  Q
    |||||||||||| |||||||  |||||||||| |||||||||||||    
T  6765120 ttataacttgtgcattttatgataaatatatatctttttaataaat 6765075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 12016782 - 12016714
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| || | ||||||| |||||||| | ||||||||| ||||||||||    
T  12016782 aacttgtgttttttatattaaatatgtagc-ttttaatcaataattgttggttttcaataaaaagttact 12016714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 16126621 - 16126689
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| || | ||||||| |||||||| | |||||||||||||| |||||    
T  16126621 aacttgtgttttttatattaaatatgtagc-ttttaatcaataattgttggttttcaatgaaaaattact 16126689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 16919216 - 16919284
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| ||||||| |||||||| | ||||||||  ||||||||||    
T  16919216 aacttgtgttttttatattaaatatgtaac-ttttaatcaataattgttggttttcaacaaaaagttact 16919284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 40562147 - 40562208
Alignment:
Q  79 tattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||| |||| ||||||||||| ||||||||||||||| || |||||||| |||| |||||    
T  40562147 tattttgtatttaatatataactctttaataaataattgttgattttcaataaaaacttact 40562208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 39607476 - 39607512
Alignment:
Q  77 tgtattttatattaaatatataactttttaataaata 113  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  39607476 tgtatttcatattaaatatataattttttaataaata 39607512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 191379 - 191443
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattgg-tgttttcaatgaaaagttac 138  Q
    |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||    
T  191379 ttgtgtattttatattaaatatataa-tttttaataaataatcggatgttttcaatgaaaaattac 191443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 43568 - 43510
Alignment:
Q  81 ttttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||||||||||||||| ||||||| |||||||| || ||||||||||||| |||||    
T  43568 ttttatattaaatatataac-ttttaattaataattgttgattttcaatgaaaaattact 43510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 6016972 - 6016903
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||||| |||| ||||||||||||||||||||||| |||||| || || |||||||||||||||||||    
T  6016972 aacttgtgcatttcatattaaatatataactttttaaaaaataagtgttgtttttcaatgaaaagttact 6016903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 1017843 - 1017909
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||| | |||||||| |||||||||||    
T  1017843 ttgtgcattttatattaaatatgtaaatttttaataaataattgttggttttcaacgaaaagttact 1017909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 22974635 - 22974703
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| ||||||| |||||||| || |||||||||||||||||||    
T  22974635 aacttgtgttttttatattaaatatgtaac-ttttaatcaataattgttgattttcaatgaaaagttact 22974703  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 23813766 - 23813698
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| ||||||| |||||||| || |||||||||||||||||||    
T  23813766 aacttgtgttttttatattaaatatgtaac-ttttaatcaataattgttgattttcaatgaaaagttact 23813698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 10887145 - 10887102
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataa 114  Q
    ||||||||||||||||||||||||| || |||||||||||||||    
T  10887145 aacttgtgtattttatattaaatatgtagctttttaataaataa 10887102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 8977527 - 8977581
Alignment:
Q  70 taacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||||| |||||||||||||||| |||||||| ||||||| |||| ||||||    
T  8977527 taacttgtgcattttatattaaatatgtaacttttcaataaatgattgttgtttt 8977581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 12454181 - 12454107
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttacttcattt 145  Q
    |||||||||||| ||||||||||| | ||||||||||  | |||||| |||||||||| |||| ||||| |||||    
T  12454181 aacttgtgtattctatattaaatagacaactttttaaatagtaattgatgttttcaataaaaaattactacattt 12454107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 18817556 - 18817626
Alignment:
Q  154 ggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||| | | |||  ||||||||||||||||    
T  18817556 ggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataagttcttc 18817626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 29730383 - 29730341
Alignment:
Q  82 tttatattaaatatataactttttaataaataattggtgtttt 124  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  29730383 tttatattaaatatataactttttaataaataactgttgtttt 29730341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 31039821 - 31039775
Alignment:
Q  70 taacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||    
T  31039821 taacttgtgtattttctattataaatataactttttaataaataatt 31039775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 23936438 - 23936483
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||    
T  23936438 aacttgtacattttatattaaatacataactttttaataaataatt 23936483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 30708108 - 30708051
Alignment:
Q  70 taacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaa 127  Q
    |||||| | |||||| |||||||||||||||||||||||  ||||||| |||||||||    
T  30708108 taacttatatattttttattaaatatataactttttaatggataattgttgttttcaa 30708051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 17596457 - 17596389
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaagttact 139  Q
    |||||||| |||||||||||| ||| ||  |||||||||| |||||| || ||||||| ||||||||||    
T  17596457 aacttgtgcattttatattaactatgtagatttttaataattaattgttggtttcaataaaaagttact 17596389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 28757558 - 28757610
Alignment:
Q  81 ttttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    |||| |||||||| ||||||||||||||||||||||| | |||||||| ||||    
T  28757558 ttttttattaaatgtataactttttaataaataattgattttttcaataaaaa 28757610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 30591224 - 30591300
Alignment:
Q  70 taacttgtgtattttatattaaatatataactttttaataaataattg-gtgttttcaatgaaaagttacttcattt 145  Q
    |||||||| |||||| |||||||| ||||||||||| |||||||||||  | |||||||| |||| ||||| |||||    
T  30591224 taacttgtatattttgtattaaatgtataactttttgataaataattgtattttttcaataaaaacttactacattt 30591300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 2830746 - 2830811
Alignment:
Q  74 ttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    |||||| ||||||||||||||| || ||||| ||| |||||||| || |||||||||||||||||||    
T  2830746 ttgtgttttttatattaaatatgtagctttt-aatcaataattgttggttttcaatgaaaagttact 2830811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 16540743 - 16540669
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtt 122  Q
    ||||||| |||||||| | ||| || |||| |||||||||||||||||||||  |||||| | ||||||| ||||    
T  16540743 ttaaaatcgtaagtttatattaaaatttgtatattttatattaaatatataatattttaagacataattgttgtt 16540669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 24902325 - 24902395
Alignment:
Q  154 ggtgcatccatatcaggcacatcaatatcatgcttattgcaaattttaataactttagatataagttcttc 224  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||||| | | |||  |||||||||| |||||    
T  24902325 ggtgcatccatatcaggtacatcaatctcatgtttagtgcaaattgtcacaaccctagatataaggtcttc 24902395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 31790955 - 31791052
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttacttcattt 145  Q
    ||||||||| |||||| ||||  ||||| |||||| |||||||||||   ||| ||||||| ||||||| ||| |||||||| |||||||||| |||||    
T  31790955 ttaaaatggcaagtttgtcttgaaacttatgtattctatattaaataggaaacgttttaat-aataattagtgtttttcaataaaaagttactacattt 31791052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 5362955 - 5363023
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggt-gttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| || | ||||||| || ||||| | ||||||||||||||||||||    
T  5362955 aacttgtgttttttatattaaatatgtagc-ttttaatcaacaattgttggttttcaatgaaaagttact 5363023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 14228197 - 14228250
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  14228197 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 14228250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 28943840 - 28943893
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    ||||| ||||||||||||||||||||  |||||||||| || ||||||| ||||    
T  28943840 attttgtattaaatatataactttttgttaaataattgttggtttcaataaaaa 28943893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 29863364 - 29863409
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataatt 116  Q
    ||||| || |||||||||||| |||| |||||||||||||||||||    
T  29863364 aacttttgcattttatattaactataaaactttttaataaataatt 29863409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 30623442 - 30623389
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||  |||| |||||||||||| ||||||| |||||||||||| ||||||    
T  30623442 aacttgtacatttgatattaaatataaaacttttgaataaataattgttgtttt 30623389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 17141382 - 17141338
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||||||||||| || ||||||||||||| |||| ||||||    
T  17141382 attttatattaaatatgtagctttttaataaattattgttgtttt 17141338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 31503858 - 31503818
Alignment:
Q  71 aacttgtgtattttatattaaatatata-actttttaataa 110  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  31503858 aacttgtgtattttatattaaatatatattctttttaataa 31503818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 22603 - 22527
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||| ||| ||| ||||| ||||| |||||| ||| ||||||||||| |||||||||||||||||| ||||||    
T  22603 ttaaaatgttaattttgtcttagaacttttgtattctatgttaaatatatagctttttaataaataattgatgtttt 22527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 18067 - 18111
Alignment:
Q  80 attttatattaaatatataactttttaataaataattggtgtttt 124  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  18067 attttatattaaatatataactttctaataaataattgttgtttt 18111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 8476 - 8538
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttcaatgaaaa 133  Q
    |||||||| |||||||||||||| | ||  ||||||||||||||||| |||||||||| ||||    
T  8476 aacttgtgcattttatattaaatttgtagttttttaataaataattgttgttttcaataaaaa 8538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 16597 - 16650
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtgttttc 125  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||    
T  16597 aacttgtgtattttctattaa-tatataaatttttaataaataattgttgttttc 16650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 52841 - 52909
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||| |||| |||||||||| |||||||| ||| |||||||| || |||||||||||||||||||    
T  52841 aacttgtgttttttgtattaaatatgtaactttt-aatcaataattgttggttttcaatgaaaagttact 52909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 182159 - 182091
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattg-gtgttttcaatgaaaagttact 139  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||  |||||||||| |||| |||||    
T  182159 aacttgtgttttttatattaaatatgtaac-ttttaataaataattgtttgttttcaataaaaaattact 182091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 145793 - 145725
Alignment:
Q  71 aacttgtgtattttatattaaatatataactttttaataaataattggtg-ttttcaatgaaaagttact 139  Q
    ||||||||| |||| |||||||||| |||||||| ||| |||||||| || |||||||||||||||||||    
T  145793 aacttgtgttttttgtattaaatatgtaactttt-aatcaataattgttggttttcaatgaaaagttact 145725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 563 - 500
Alignment:
Q  48 ttaaaatggtaagtttctcttataacttgtgtattttatattaaatatataactttttaataaa 111  Q
    |||||||| ||| ||| ||||| ||||| |||||||||| ||||||||||| ||||| ||||||    
T  563 ttaaaatgttaattttgtcttagaacttctgtattttatgttaaatatatagcttttcaataaa 500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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