View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_42 (Length: 218)
Name: NF0786_low_42
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 47798831 - 47798650
Alignment:
| Q |
1 |
ggacttagattaagaagcaagatataggtgatacatgtatagtactaaaagttgttaatttggaaatcaaaattattgaattatttttcataactctaat |
100 |
Q |
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| T |
47798831 |
ggacttagattaagaagcaagatataggtgatatatgtatagtactaaaagttgttaatttggaaatcaaaattattgaattatttttcataactctaat |
47798732 |
T |
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| Q |
101 |
gtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctgttgatgatgt |
182 |
Q |
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| T |
47798731 |
gtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctgttgctgatgt |
47798650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 39777384 - 39777493
Alignment:
| Q |
73 |
ttattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctg |
172 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
39777384 |
ttattgaattatttttcataactctaacgtaatttgcagtttccattaatttcaaaaagtggatacataaggaagctcatttcagaatctagtgatgctg |
39777483 |
T |
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| Q |
173 |
ttgatgatgt |
182 |
Q |
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| T |
39777484 |
ttgatgatgt |
39777493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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