View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_5 (Length: 456)
Name: NF0786_low_5
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 30 - 446
Target Start/End: Original strand, 10120327 - 10120743
Alignment:
| Q |
30 |
aattagatggaactgacaggtttatgtagtgtacatgggaagcaaaggtagtgatcaagactcagatgatattctgaagcataatcatcaaatgctagca |
129 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10120327 |
aattggatggaactgacaggtttatgtagtgtacatgggaagcaaaggtagtgatcaagactcagatgatattctgaagcataatcatcaaatgctagca |
10120426 |
T |
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| Q |
130 |
gatgttcatagtggaaggtaagaaattaattcttgtattcatttggaatatccctttttctatgtaatttcaggtatgtgatttttccttattttttaac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10120427 |
gatgttcatagtggaaggtaagaaattaattcttgtattcatttggaatatccctttttctatgtaatttcaggtatgtgatttttccttattttttaac |
10120526 |
T |
|
| Q |
230 |
agtgttgaacaagcacaggcttcacatatttgcagctacaaacatggtttcaaaggctttgcagcaaagttgaccaatgaacaagcttaccaaatttcaa |
329 |
Q |
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| T |
10120527 |
agtgttgaacaagcacaggcttcacatatttacagctacaaacatggtttcaaaggctttgcagcaaagttgaccaatgaacaagcttaccaaatttcaa |
10120626 |
T |
|
| Q |
330 |
gtcagtgacattttcctcttccttaaagcttcaatgcttaaaggatcctataatttttgttgtttacttatttatttggtttgaatgtgaccagaaatgc |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10120627 |
gtcagtgacattttcctcttccttaaagcttcaatgcttaaagtatcctataatttttgttgtttacttatttatttggtttgaatgtgaccagaaatgc |
10120726 |
T |
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| Q |
430 |
cgggagtagtttctgtg |
446 |
Q |
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| T |
10120727 |
cgggagtagtttctgtg |
10120743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 30630415 - 30630322
Alignment:
| Q |
234 |
ttgaacaagcacaggcttcacatatttgcagctacaaacatggtttcaaaggctttgcagcaaagttgaccaatgaacaagcttaccaaatttc |
327 |
Q |
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||||| ||||||| ||||| ||||||| ||||| | |||||| |||| |||||||||||| ||| | || |||||||||||| | ||||||| |
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| T |
30630415 |
ttgaagaagcacaagcttctcatatttatagctatagacatggattcagaggctttgcagctaagctcactgatgaacaagcttccaaaatttc |
30630322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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