View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_high_11 (Length: 360)
Name: NF0787_high_11
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_high_11 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 28730882 - 28731200
Alignment:
| Q |
13 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
28730882 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctcttcgtattttaccttcattgcaagggagaggatgctgaaac |
28730981 |
T |
|
| Q |
113 |
cgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtg |
212 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28730982 |
cgttattacggagcctgagcgttgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggagtgtgaacatgagcactggaacggtg |
28731081 |
T |
|
| Q |
213 |
atcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaacc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731082 |
atcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaacc |
28731181 |
T |
|
| Q |
313 |
attccgttgttgaatagat |
331 |
Q |
| |
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||||||||||||||||||| |
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| T |
28731182 |
attccgttgttgaatagat |
28731200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 38121308 - 38121626
Alignment:
| Q |
13 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaac |
112 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
38121308 |
gagaatatagaaagatcatcaacagcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatagcaagggagaggatgctgaaac |
38121407 |
T |
|
| Q |
113 |
cgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtg |
212 |
Q |
| |
|
|||||||||||||||| | | || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
38121408 |
cgttattacggagccttaccattgcatctcgtagcatgaggcgcataatagcagggagcacggtggcgccgggagtgtgaacatgagcaccggaacggtg |
38121507 |
T |
|
| Q |
213 |
atcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaacc |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38121508 |
atcaggatgaaacggaaaggagagagaactcattctctcaacgtcgcaagaaaacggagaaagcttagaggcgaaaccttgaaggccgtgaacaacaacc |
38121607 |
T |
|
| Q |
313 |
attccgttgttgaatagat |
331 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
38121608 |
attccgttgttgaatagat |
38121626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 38608815 - 38608497
Alignment:
| Q |
13 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
38608815 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaac |
38608716 |
T |
|
| Q |
113 |
cgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtg |
212 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||| ||||| || ||||||| ||||||||||||||||| |
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| T |
38608715 |
cgttattacggagcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtg |
38608616 |
T |
|
| Q |
213 |
atcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaacc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
38608615 |
atcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaacc |
38608516 |
T |
|
| Q |
313 |
attccgttgttgaatagat |
331 |
Q |
| |
|
||||||||||||||||||| |
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| T |
38608515 |
attccgttgttgaatagat |
38608497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 38793598 - 38793280
Alignment:
| Q |
13 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
38793598 |
gagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaac |
38793499 |
T |
|
| Q |
113 |
cgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtg |
212 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||| ||||| || ||||||| ||||||||||||||||| |
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|
| T |
38793498 |
cgttattacggagcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtg |
38793399 |
T |
|
| Q |
213 |
atcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaacc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
38793398 |
atcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaacc |
38793299 |
T |
|
| Q |
313 |
attccgttgttgaatagat |
331 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38793298 |
attccgttgttgaatagat |
38793280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 34038 - 34158
Alignment:
| Q |
211 |
tgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaa |
310 |
Q |
| |
|
||||| ||||| ||||| || ||||| || ||||| ||||| ||||||||| |||||||||| |||| |||| ||||||||||||||| |||| ||| | |
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|
| T |
34038 |
tgatctggatggaacgggaacgagagcgaggtcatcctctccacgtcgcaataaaacggagagagcggagagatgaaaccttgaaggccatgaataacca |
34137 |
T |
|
| Q |
311 |
ccattccgttgttgaatagat |
331 |
Q |
| |
|
|||| ||||||||||| |||| |
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|
| T |
34138 |
ccatgccgttgttgaagagat |
34158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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