View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0787_high_14 (Length: 332)

Name: NF0787_high_14
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0787_high_14
NF0787_high_14
[»] chr1 (7 HSPs)
chr1 (1-255)||(47636407-47636661)
chr1 (103-241)||(47287585-47287723)
chr1 (103-209)||(47574592-47574698)
chr1 (131-209)||(47607328-47607406)
chr1 (68-133)||(47568239-47568304)
chr1 (49-206)||(47711620-47711777)
chr1 (85-233)||(6497761-6497909)
[»] chr4 (4 HSPs)
chr4 (136-212)||(36290572-36290648)
chr4 (73-159)||(36376261-36376347)
chr4 (73-159)||(36429306-36429392)
chr4 (82-138)||(36389512-36389568)
[»] chr2 (4 HSPs)
chr2 (163-209)||(2712576-2712622)
chr2 (163-209)||(2717100-2717146)
chr2 (163-209)||(2723722-2723768)
chr2 (133-209)||(2698501-2698577)
[»] chr5 (3 HSPs)
chr5 (136-213)||(454539-454616)
chr5 (85-122)||(28419879-28419916)
chr5 (85-122)||(28433112-28433149)
[»] chr3 (1 HSPs)
chr3 (67-172)||(36067108-36067213)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 47636407 - 47636661
Alignment:
Q  1 tagtcttatgaatagaaaatttattcagatcctgaaaaacaaaggctgttggattggacaaggcgttacaagattattggagggattgctcgaggcattc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47636407 tagtcttatgaatagaaaatttatgcagatcctgaaaaacaaaggctgttggattggacaaggcgttacaagattattggagggattgcgcgaggcattc 47636506  T
Q  101 aatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47636507 aatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactt 47636606  T
Q  201 tggcatggcaaaattattcggagtggatcaaactcaaggaaataccagtataatc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47636607 tggcatggcaaaattattcggagtggatcaaactcaaggaaataccagtagaatc 47636661  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 47287585 - 47287723
Alignment:
Q  103 tatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttg 202  Q
    |||||||| ||||||||| | |||| ||| || ||||| |||||||||||||| || ||||| || ||||   || | ||||| ||||| || || ||||    
T  47287585 tatcttcacgaagattctcgacttagaatcatacatcgcgatcttaaagctagtaatatattattagatgagaatttaaatcccaaaatttcagattttg 47287684  T
Q  203 gcatggcaaaattattcggagtggatcaaactcaaggaa 241  Q
    | ||||||| | |||| || || |||||||||| |||||    
T  47287685 ggatggcaagaatatttggtgttgatcaaactcgaggaa 47287723  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 47574592 - 47574698
Alignment:
Q  103 tatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttg 202  Q
    ||||| |||||||||||| | || ||||| || ||||||||||| ||| ||||| |  |  |||| |||||  |||||||||||||||| || || ||||    
T  47574592 tatctccatgaagattctcgcctcaaaatcatacatcgtgatctgaaacctagcgatgtcctgttagatggtaatatgaatccaaaaatatcagattttg 47574691  T
Q  203 gcatggc 209  Q
    |||||||    
T  47574692 gcatggc 47574698  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 47607328 - 47607406
Alignment:
Q  131 ttattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggc 209  Q
    |||| ||||||||||||||| |||| || || || || |||| | |||||||||| |||||||| || |||||||||||    
T  47607328 ttatacatcgtgatcttaaacctagtaatattttattagatgaacatatgaatcctaaaatctcagattttggcatggc 47607406  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 47568239 - 47568304
Alignment:
Q  68 acaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaatta 133  Q
    |||||||||||||||| ||||||||||| ||||  ||||| ||||| |||||  | ||||||||||    
T  47568239 acaagattattggaggaattgctcgaggaattctttatctccatgaggattcacgccttaaaatta 47568304  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 47711777 - 47711620
Alignment:
Q  49 ttggattggacaaggcgttacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatctta 148  Q
    |||||||||  |||||| ||||| || |||||||| || ||| ||||| |||  || |||||||| ||||||   |||   ||||| |||||||||||||    
T  47711777 ttggattgggaaaggcgctacaaaatcattggaggtatagctagaggccttctttaccttcatgaggattctcaacttcgtattatacatcgtgatctta 47711678  T
Q  149 aagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcat 206  Q
    |||| || |||||  | ||||||| | |  ||||||| ||||| || |||||||||||    
T  47711677 aagcaagtaacattctcttggatgaaaagttgaatcctaaaatatcagactttggcat 47711620  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 6497909 - 6497761
Alignment:
Q  85 attgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatc 184  Q
    ||||||||||||||||  || ||||| || |||||| | ||    ||||||||||||||||| ||||| || |||||  | || |||| ||| |||||||    
T  6497909 attgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatc 6497810  T
Q  185 caaaaatctcggactttggcatggcaaaattattcggagtggatcaaac 233  Q
    | || || || || ||||||||||||| | |||| || ||||| |||||    
T  6497809 ctaagatatctgattttggcatggcaagactatttggtgtggaccaaac 6497761  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 36290572 - 36290648
Alignment:
Q  136 catcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaa 212  Q
    ||||| ||||| ||||| |||||||| |||||||||| | |||||||||||||||| || ||||||||| |||||||    
T  36290572 catcgagatctaaaagcaagcaacattttgttggatgaaaatatgaatccaaaaatttcagactttggcttggcaaa 36290648  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 36376261 - 36376347
Alignment:
Q  73 attattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaac 159  Q
    |||||| | ||||||||||||||  ||  |||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||    
T  36376261 attatttgtgggattgctcgaggtgttttatatcttcatcaagattcaaggctgaaaataattcatagagatctaaaagccagcaac 36376347  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 36429306 - 36429392
Alignment:
Q  73 attattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaac 159  Q
    |||||| | ||||||||||||||  ||  |||||||||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||||    
T  36429306 attatttgtgggattgctcgaggtgttttatatcttcatcaagattcaaggctgaaaataattcatagagatctaaaagccagcaac 36429392  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 36389512 - 36389568
Alignment:
Q  82 gggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcat 138  Q
    ||||||||||||||| ||  |||||||||| ||||||| ||||| ||||| ||||||    
T  36389512 gggattgctcgaggcgttttatatcttcatcaagattcaaggctgaaaatcattcat 36389568  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 2712622 - 2712576
Alignment:
Q  163 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 209  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||    
T  2712622 ttgttggatggagaaatgaatccaaaaatatctgactttggcatggc 2712576  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 2717146 - 2717100
Alignment:
Q  163 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 209  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||    
T  2717146 ttgttggatggagaactgaatccaaaaatatccgactttggcatggc 2717100  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 2723768 - 2723722
Alignment:
Q  163 ttgttggatggagatatgaatccaaaaatctcggactttggcatggc 209  Q
    ||||||||||||||  ||||||||||||| || ||||||||||||||    
T  2723768 ttgttggatggagaactgaatccaaaaatatccgactttggcatggc 2723722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 2698577 - 2698501
Alignment:
Q  133 attcatcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggc 209  Q
    |||||||| ||||| ||||| || ||||| ||||| |||| | | |||||||||||||| || ||||||||| ||||    
T  2698577 attcatcgagatctaaaagcaagtaacattttgttagatgaaaacatgaatccaaaaatatctgactttggcttggc 2698501  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 454616 - 454539
Alignment:
Q  136 catcgtgatcttaaagctagcaacatattgttggatggagatatgaatccaaaaatctcggactttggcatggcaaaa 213  Q
    ||||||||||| ||| ||||||| |||||||| |||    |||||||||||||||| || |||||||| |||||||||    
T  454616 catcgtgatctcaaacctagcaatatattgttagataagaatatgaatccaaaaatatcagactttggtatggcaaaa 454539  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 28419879 - 28419916
Alignment:
Q  85 attgctcgaggcattcaatatcttcatgaagattctag 122  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28419879 attgctcgaggaattcaatatcttcatcaagattctag 28419916  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 28433112 - 28433149
Alignment:
Q  85 attgctcgaggcattcaatatcttcatgaagattctag 122  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28433112 attgctcgaggaattcaatatcttcatcaagattctag 28433149  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 36067213 - 36067108
Alignment:
Q  67 tacaagattattggagggattgctcgaggcattcaatatcttcatgaagattctaggcttaaaattattcatcgtgatcttaaagctagcaacatattgt 166  Q
    |||||||||||  |||||||||| ||||| ||||  ||||| ||||| ||||||   || ||||| || ||  ||||||||||| | |||||||| ||||    
T  36067213 tacaagattataagagggattgcacgaggtattctttatctacatgaggattctcatctaaaaatcatacactgtgatcttaaacccagcaacattttgt 36067114  T
Q  167 tggatg 172  Q
    ||||||    
T  36067113 tggatg 36067108  T

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