View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_high_16 (Length: 271)
Name: NF0787_high_16
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 4858504 - 4858675
Alignment:
| Q |
71 |
caaacaagtgtgattgtgactattgagctatgttatgttcacgtaacaagcttttacatacaataaattgtacattgaattcagaataaataaaagatgt |
170 |
Q |
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| T |
4858504 |
caaacaagtgtgattgtgactattgag-tatgttatgttcacgtaacaagcttttacatacaataaattgtacattgaattctgaataaataaaagatgt |
4858602 |
T |
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| Q |
171 |
attgttatcaaatatcaaagaaaatac-nnnnnnnnnngaaggaaaaagaaaatacattgtaaaggtcaattt |
242 |
Q |
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| T |
4858603 |
attgttatcaaatatcaaagaaaatacatattttttttgaaggaaaaagaaaatacattgtaaaggtcaattt |
4858675 |
T |
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