View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_high_19 (Length: 255)
Name: NF0787_high_19
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_high_19 |
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| [»] chr4 (3 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 28730235 - 28730483
Alignment:
| Q |
7 |
gcagcacagactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaacttattaacgacaaatttcatatagttttactt |
106 |
Q |
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| T |
28730235 |
gcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacggtgtaaacttattaactacaaatttcatatagttttactt |
28730334 |
T |
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| Q |
107 |
cagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggc |
206 |
Q |
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| T |
28730335 |
cagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggc |
28730434 |
T |
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| Q |
207 |
ataggagacacacctgttgcagcagtgacatcagcagcacaaccaccac |
255 |
Q |
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| T |
28730435 |
atgggagacacacctgttgcagcagtgacatcagcagcacagccaccac |
28730483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 33078592 - 33078556
Alignment:
| Q |
57 |
atgaacaacagtgtaaacttattaacgacaaatttca |
93 |
Q |
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| T |
33078592 |
atgaacaacagtgtaaacttattaactacaaatttca |
33078556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
| Q |
110 |
cagagaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaat |
181 |
Q |
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| T |
33078557 |
cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 38120658 - 38120909
Alignment:
| Q |
7 |
gcagcacagactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaacttattaacgacaaatttcatatagttttactt |
106 |
Q |
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| T |
38120658 |
gcagcacaaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaacttattaactacaaatttcatagagattcactt |
38120757 |
T |
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| Q |
107 |
cagcagagaatgaagtaaatcgcaatct---tcgtcatcatcgaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctga |
203 |
Q |
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| T |
38120758 |
cagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctga |
38120857 |
T |
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| Q |
204 |
ggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccac |
255 |
Q |
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| T |
38120858 |
ggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccac |
38120909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 68 - 255
Target Start/End: Complemental strand, 38609401 - 38609214
Alignment:
| Q |
68 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
167 |
Q |
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| T |
38609401 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38609302 |
T |
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| Q |
168 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccac |
255 |
Q |
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| T |
38609301 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccac |
38609214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 68 - 255
Target Start/End: Complemental strand, 38794184 - 38793997
Alignment:
| Q |
68 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
167 |
Q |
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||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
38794184 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38794085 |
T |
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| Q |
168 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccac |
255 |
Q |
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| T |
38794084 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccac |
38793997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 34592957 - 34592845
Alignment:
| Q |
113 |
agaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcata |
209 |
Q |
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|||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
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| Q |
210 |
ggagacacacctg |
222 |
Q |
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| T |
34592857 |
ggagacacacctg |
34592845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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