View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_1 (Length: 665)
Name: NF0787_low_1
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_1 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Original strand, 26965415 - 26966094
Alignment:
| Q |
1 |
gaatctgtgtatgtgcagtcgtcggcacaggtataaattggtctggagaactagaaactacaggagttaccttgcgagaatgactagcggtagtggatcc |
100 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26965415 |
gaatctgtgtatgcgcagtcatcggcacaggtataaattggtctggagaactagaaactacaggagttaccttgtgagaatgactagcggtagtggatcc |
26965514 |
T |
|
| Q |
101 |
gacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtaggtggtggattcaccgatggagcgtatgcatgatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965515 |
gacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtaggtggtggattcaccgatggagcgtatgcatgatgt |
26965614 |
T |
|
| Q |
201 |
gaatatgtaggtggtagcgtgtatcccgatggtgtaagtttcggtggtgcatatgcattttgttgatacacagctgatgaagtatgggtaggtggaggcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965615 |
gaatatgtaggtggtagcgtgtatcccgatggtgtaagtttcggtggtgcatatgcattttgttgatacacagctgatgaagtatgggtaggtggaggcg |
26965714 |
T |
|
| Q |
301 |
gagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcggcacaggtataaattggtctggagaactagaaactacaggagttaccttgcgaga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| |
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| T |
26965715 |
gagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcggcacaggtatacattggtctggagaactagaaactacacaagttaccttgagaga |
26965814 |
T |
|
| Q |
401 |
atgactagcggtagtggatccgacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtaggtggtggattcacc |
500 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| |||| || |
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| T |
26965815 |
atgactagtggtagtggatccgacacccttccccttaccactgggtggccgtatgtgtgaaggtccacccgacaacggatttgtaggtggtgtattcgcc |
26965914 |
T |
|
| Q |
501 |
gatggagcgtatgcatgatgtgaatat---------------gtaggtggtagcgtgtatcccgatggtgtaagtttcggtggtgcatatgcattttgtt |
585 |
Q |
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|||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||| |||| ||||||||||| |||| |||| |
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| T |
26965915 |
gatggagcatatgcatgatgtggatatattggtggtggataaataggtggtagtgtgtatcccgatggtgtatgttttggtggtgcataggcatgttgtg |
26966014 |
T |
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| Q |
586 |
gatacacagctgatgaagtatgggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtc |
665 |
Q |
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| T |
26966015 |
gatacacaggtgatgaagtatgcgtaggtggaggcggagcatatgtatgaggagatggagtctgtatatgtgcagccgtc |
26966094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 287 - 665
Target Start/End: Original strand, 26965380 - 26965758
Alignment:
| Q |
287 |
ggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcggcacaggtataaattggtctggagaactagaaactacagga |
386 |
Q |
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|||||||||||| ||| |||| ||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965380 |
ggtaggtggaggtggaacataggtatgaggagatggaatctgtgtatgcgcagtcatcggcacaggtataaattggtctggagaactagaaactacagga |
26965479 |
T |
|
| Q |
387 |
gttaccttgcgagaatgactagcggtagtggatccgacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtag |
486 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965480 |
gttaccttgtgagaatgactagcggtagtggatccgacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtag |
26965579 |
T |
|
| Q |
487 |
gtggtggattcaccgatggagcgtatgcatgatgtgaatatgtaggtggtagcgtgtatcccgatggtgtaagtttcggtggtgcatatgcattttgttg |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965580 |
gtggtggattcaccgatggagcgtatgcatgatgtgaatatgtaggtggtagcgtgtatcccgatggtgtaagtttcggtggtgcatatgcattttgttg |
26965679 |
T |
|
| Q |
587 |
atacacagctgatgaagtatgggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtc |
665 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965680 |
atacacagctgatgaagtatgggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtc |
26965758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 26965736 - 26966106
Alignment:
| Q |
1 |
gaatctgtgtatgtgcagtcgtcggcacaggtataaattggtctggagaactagaaactacaggagttaccttgcgagaatgactagcggtagtggatcc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| |
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| T |
26965736 |
gaatctgtgtatgtgcagtcgtcggcacaggtatacattggtctggagaactagaaactacacaagttaccttgagagaatgactagtggtagtggatcc |
26965835 |
T |
|
| Q |
101 |
gacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtaggtggtggattcaccgatggagcgtatgcatgatgt |
200 |
Q |
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||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||||||| |
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| T |
26965836 |
gacacccttccccttaccactgggtggccgtatgtgtgaaggtccacccgacaacggatttgtaggtggtgtattcgccgatggagcatatgcatgatgt |
26965935 |
T |
|
| Q |
201 |
gaatatgt---------------aggtggtagcgtgtatcccgatggtgtaagtttcggtggtgcatatgcattttgttgatacacagctgatgaagtat |
285 |
Q |
| |
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| |||| | ||||||||| |||||||||||||||||| |||| ||||||||||| |||| |||| ||||||||| ||||||||||| |
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| T |
26965936 |
ggatatattggtggtggataaataggtggtagtgtgtatcccgatggtgtatgttttggtggtgcataggcatgttgtggatacacaggtgatgaagtat |
26966035 |
T |
|
| Q |
286 |
gggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcggcacaggtata |
356 |
Q |
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| |||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||| ||||||| |
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| T |
26966036 |
gcgtaggtggaggcggagcatatgtatgaggagatggagtctgtatatgtgcagccgtcggcataggtata |
26966106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 286 - 401
Target Start/End: Original strand, 26965082 - 26965200
Alignment:
| Q |
286 |
gggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcggcacaggtataaattggtct---ggagaactagaaactac |
382 |
Q |
| |
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|||||||||||||| ||| ||| ||||||||||||||| || |||||||||||||| |||||| ||||||||| |||||| ||||||| ||||||||| |
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| T |
26965082 |
gggtaggtggaggcagagtataggtatgagaagatggagtccgtgtatgtgcagtcatcggcataggtataaactggtctaaaggagaaccagaaactac |
26965181 |
T |
|
| Q |
383 |
aggagttaccttgcgagaa |
401 |
Q |
| |
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||||||||||||||||| |
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| T |
26965182 |
tcgagttaccttgcgagaa |
26965200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 26965124 - 26965200
Alignment:
| Q |
7 |
gtgtatgtgcagtcgtcggcacaggtataaattggtct---ggagaactagaaactacaggagttaccttgcgagaa |
80 |
Q |
| |
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|||||||||||||| |||||| ||||||||| |||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
26965124 |
gtgtatgtgcagtcatcggcataggtataaactggtctaaaggagaaccagaaactactcgagttaccttgcgagaa |
26965200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 607 - 662
Target Start/End: Original strand, 26965082 - 26965137
Alignment:
| Q |
607 |
gggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtc |
662 |
Q |
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|||||||||||||| ||| ||| ||||||||||||||| || |||||||||||||| |
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| T |
26965082 |
gggtaggtggaggcagagtataggtatgagaagatggagtccgtgtatgtgcagtc |
26965137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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