View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_12 (Length: 419)
Name: NF0787_low_12
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 40050781 - 40051192
Alignment:
| Q |
1 |
accaggtttgagggttgaaaaggaattgtcatttggtgcaaagagtgttaatccattgtttgagtttaggagttgtgcattgatttgtgtggctacttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40050781 |
accaggtttgagggttgaaaaggaattgtcatttggtgcaaagagtgttagtccattgtttgagtttaggagttgtgcattgatttgtgtggctacttga |
40050880 |
T |
|
| Q |
101 |
gtggtttggaggaggcggataagggtggtgaatccgccggcttttttgaggattcggataatatctgttggggctgatgatggtgatggtgctggtgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40050881 |
gtggtttggaggaggcggataagggtggtgaatccaccggcttttttgaggattcggataatatctgttggggctgatgatggtgatggtgctggtgatt |
40050980 |
T |
|
| Q |
201 |
cagatgctgaatttatggtggtgggatagaagaggactattaggagaagtgagagtgtgaagagaggatagtt---------catcttgagtttgttgaa |
291 |
Q |
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| T |
40050981 |
cagatgctgaatttatggtggtgggatagaagaggactattaggagaagtgagagtgtgaagagaggatagttcatctttaccatcttgagtttgttgaa |
40051080 |
T |
|
| Q |
292 |
aggggagaagagaatggagaagtggaccttgaagtgggaatgagggagtgagtgatcaaatttattgaggattcaaaggggttatcttaaaattaggtgg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051081 |
aggggagaagagaatggagaagtggaccttgaagtgggaatgagggagtgagtgatcaaatttattgaggattcaaaggggttatcttaaaattaggtgg |
40051180 |
T |
|
| Q |
392 |
aatgtttaatta |
403 |
Q |
| |
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| T |
40051181 |
aatgtttaatta |
40051192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 22034911 - 22034742
Alignment:
| Q |
5 |
ggtttgagggttgaaaaggaattgtcatttggtgcaaagagtgttaatccattgtttgagtttaggagttgtgcattgatttgtgtggctacttgagtgg |
104 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||| | ||||| ||| ||| ||||||| |||||| | |||||||| |||| ||||| |||| |
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| T |
22034911 |
ggtttgagacttgaaaaggaattgtcgtttggtgcaaacaaggttaaaccaccgttcgagtttaagagttgagagttgatttgggtggacacttgtgtgg |
22034812 |
T |
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| Q |
105 |
tttggaggaggcggataagggtggtgaatccgccggcttttttgaggattcggataatatctgttggggc |
174 |
Q |
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||||||| || ||||| || |||||||| || || || ||||||||||||| |||||| || |||||||| |
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| T |
22034811 |
tttggagaagacggattagcgtggtgaaccctccagcctttttgaggattctgataatgtcggttggggc |
22034742 |
T |
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