View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_13 (Length: 387)
Name: NF0787_low_13
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_13 |
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| [»] chr4 (3 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 28730113 - 28730483
Alignment:
| Q |
10 |
aagaatatctgtaaagactaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaactaactacaaatt |
109 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28730113 |
aagaaaatctgtaaagactaaatccaca-------ttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaattaactacaaatt |
28730205 |
T |
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| Q |
110 |
cagagttacaattcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaactta |
209 |
Q |
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| T |
28730206 |
cagagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacggtgtaaactta |
28730305 |
T |
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| Q |
210 |
ttaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggccatggtgatctt |
309 |
Q |
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| T |
28730306 |
ttaactacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatctt |
28730405 |
T |
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| Q |
310 |
caatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccac |
387 |
Q |
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| T |
28730406 |
caatctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagccaccac |
28730483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 33078592 - 33078556
Alignment:
| Q |
189 |
atgaacaacagtgtaaacttattaacgacaaatttca |
225 |
Q |
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| T |
33078592 |
atgaacaacagtgtaaacttattaactacaaatttca |
33078556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
| Q |
242 |
cagagaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaat |
313 |
Q |
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| T |
33078557 |
cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 38120531 - 38120909
Alignment:
| Q |
10 |
aagaatatctgtaaagactaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaactaactacaaatt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||| | ||||||||||||||| |||||||||||| |
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| T |
38120531 |
aagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagtt--ggataatagtgtgaattaactacaaatt |
38120628 |
T |
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| Q |
110 |
cagagttacaattcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaactta |
209 |
Q |
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| T |
38120629 |
caaagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaactta |
38120728 |
T |
|
| Q |
210 |
ttaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatct---tcgtcatcatcgaaccatcacactcacaggccatggtgat |
306 |
Q |
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| T |
38120729 |
ttaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgat |
38120828 |
T |
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| Q |
307 |
cttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccac |
387 |
Q |
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| T |
38120829 |
cttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccac |
38120909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 200 - 387
Target Start/End: Complemental strand, 38609401 - 38609214
Alignment:
| Q |
200 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
299 |
Q |
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||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
38609401 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38609302 |
T |
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| Q |
300 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccac |
387 |
Q |
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| T |
38609301 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccac |
38609214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 200 - 387
Target Start/End: Complemental strand, 38794184 - 38793997
Alignment:
| Q |
200 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
299 |
Q |
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||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
38794184 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38794085 |
T |
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| Q |
300 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccac |
387 |
Q |
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| T |
38794084 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccac |
38793997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 34592957 - 34592845
Alignment:
| Q |
245 |
agaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcata |
341 |
Q |
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|||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
342 |
ggagacacacctg |
354 |
Q |
| |
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| T |
34592857 |
ggagacacacctg |
34592845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 3928106 - 3928143
Alignment:
| Q |
130 |
caaagaagtgcagcacaaactaaaaagaactaagcaac |
167 |
Q |
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||||||||||| |||||||||||||||| ||||||||| |
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| T |
3928106 |
caaagaagtgctgcacaaactaaaaagatctaagcaac |
3928143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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