View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0787_low_15 (Length: 363)

Name: NF0787_low_15
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0787_low_15
NF0787_low_15
[»] chr7 (1 HSPs)
chr7 (98-354)||(6974267-6974523)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 98 - 354
Target Start/End: Original strand, 6974267 - 6974523
Alignment:
Q  98 agattcatcaatcgaaaatctaataaaatcatggaagagaaggcaaagatggttgtttctttttacaacatcaaaccaacaagatttattgaataataga 197  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||     
T  6974267 agattcatcaatccaaaatctaataaaatcatgtaagagaaggcaaagatggttatttctttttaccacatcaaaccaacaagatttattgaataatagg 6974366  T
Q  198 gcatcatggcgtattcatttggctcattttctagaatcaacaatgattcgtgtgttatcaattttattgctcactatagacctcatcatcacaattcttg 297  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6974367 gcatcatggcgtattcatttgtcaaattttctagaatcaacaatgattcgtgtgttatcaattttattgctcactatagacctcatcatcacaattcttg 6974466  T
Q  298 aactatcttcctctctagtttcatgtaaacaaaaaataaacatcgtagaagaattat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6974467 aactatcttcctctctagtttcatgtaaacaaaaaataaacatagtagaagaattat 6974523  T

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