View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0787_low_21 (Length: 321)

Name: NF0787_low_21
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0787_low_21
NF0787_low_21
[»] chr6 (11 HSPs)
chr6 (36-288)||(2601920-2602172)
chr6 (37-232)||(33234934-33235127)
chr6 (42-177)||(6820967-6821103)
chr6 (141-224)||(19294279-19294362)
chr6 (144-232)||(56894-56982)
chr6 (141-232)||(34011336-34011427)
chr6 (141-216)||(34013439-34013514)
chr6 (36-215)||(14494518-14494698)
chr6 (141-216)||(17539919-17539994)
chr6 (126-191)||(6812415-6812480)
chr6 (160-232)||(1255869-1255941)
[»] chr1 (6 HSPs)
chr1 (36-228)||(16426322-16426515)
chr1 (36-163)||(3387610-3387738)
chr1 (144-228)||(32740740-32740824)
chr1 (36-139)||(50127239-50127343)
chr1 (136-232)||(50127494-50127590)
chr1 (36-146)||(3954922-3955033)
[»] scaffold1723 (1 HSPs)
scaffold1723 (36-177)||(416-557)
[»] chr2 (10 HSPs)
chr2 (58-215)||(41848922-41849080)
chr2 (42-232)||(38783695-38783886)
chr2 (36-216)||(17651161-17651342)
chr2 (36-232)||(32200902-32201099)
chr2 (36-232)||(9929517-9929714)
chr2 (43-193)||(16661263-16661414)
chr2 (141-203)||(18724896-18724959)
chr2 (141-201)||(27003952-27004012)
chr2 (141-216)||(34409767-34409843)
chr2 (166-215)||(4748269-4748318)
[»] chr8 (11 HSPs)
chr8 (36-232)||(27401709-27401906)
chr8 (43-212)||(28867194-28867364)
chr8 (54-232)||(15850553-15850732)
chr8 (36-222)||(3159736-3159914)
chr8 (43-212)||(28869758-28869927)
chr8 (36-163)||(18393630-18393758)
chr8 (94-157)||(13097405-13097468)
chr8 (36-109)||(2875458-2875532)
chr8 (36-82)||(2889813-2889859)
chr8 (36-82)||(3145276-3145322)
chr8 (141-216)||(18603242-18603317)
[»] scaffold0012 (1 HSPs)
scaffold0012 (36-158)||(209151-209272)
[»] chr4 (4 HSPs)
chr4 (92-193)||(32593718-32593819)
chr4 (141-232)||(54305542-54305633)
chr4 (141-228)||(55680627-55680714)
chr4 (167-232)||(658632-658697)
[»] chr7 (14 HSPs)
chr7 (36-193)||(11809357-11809507)
chr7 (48-154)||(27993866-27993973)
chr7 (111-193)||(9730062-9730144)
chr7 (141-233)||(27616210-27616302)
chr7 (141-232)||(43837406-43837497)
chr7 (141-215)||(5741583-5741657)
chr7 (141-214)||(11812686-11812759)
chr7 (36-177)||(11816930-11817064)
chr7 (141-187)||(11820706-11820752)
chr7 (36-177)||(37338842-37338984)
chr7 (182-232)||(45216141-45216191)
chr7 (36-119)||(11810994-11811077)
chr7 (149-201)||(11814584-11814636)
chr7 (130-170)||(48598252-48598292)
[»] chr5 (4 HSPs)
chr5 (95-169)||(4111966-4112040)
chr5 (54-215)||(32676732-32676893)
chr5 (36-232)||(40837692-40837889)
chr5 (126-216)||(41815782-41815871)
[»] chr3 (4 HSPs)
chr3 (141-230)||(43922128-43922217)
chr3 (141-232)||(26565197-26565288)
chr3 (70-214)||(21408973-21409118)
chr3 (69-177)||(11410624-11410733)
[»] scaffold0325 (1 HSPs)
scaffold0325 (105-208)||(12788-12891)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 36 - 288
Target Start/End: Complemental strand, 2602172 - 2601920
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgactcttaatttagatc 135  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2602172 aaagggtaaatactattgtatcttgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgattcttaatttagatc 2602073  T
Q  136 ttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgtatg 235  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||    
T  2602072 ttttataaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgacgtgtccgtgtaactgtcgtgtcaggtgtctg 2601973  T
Q  236 tacttcatggtattggagagaaagtaacactttaccgactaaattgatggtct 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2601972 tacttcatggtattggagagaaagtaacactttaccgactaaattgatggtct 2601920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 232
Target Start/End: Original strand, 33234934 - 33235127
Alignment:
Q  37 aagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatc 135  Q
    |||| |||||||||||||||||||||||| | |||||| ||||||| |||  |||| |||||||||||  |||| ||||||||||   | |||||||||     
T  33234934 aaggtcaaatactattgtatcttgttataaaacttttt-taatgaaataaattgctcaagttagatgc--atgtatgtattttgatgataaatttagata 33235030  T
Q  136 ttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    |||| |||||||||||||| |||||||    ||||||||||| ||| |||||||||||||  |||||| |||||  | ||| |||||| ||||||||    
T  33235031 ttttataaataaattaatacataggtaacaatgtcggtgtcctaggctttttacattaacgatgtcgacgtgtctctatcaatgtcgtatcaggtgt 33235127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 6821103 - 6820967
Alignment:
Q  42 caaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttg 140  Q
    |||||||||||| |  |||||||| | || ||| ||||||| |||  |||| ||| ||||||||||||| | |||||||| ||| ||||||||| ||||     
T  6821103 caaatactattgcacattgttatacaactatttttaatgaaataaattgctcaagatagatgcatatgtatatattttgattctaaatttagatttttta 6821004  T
Q  141 taaataaattaatatataggtagaggtgtcggtgtcc 177  Q
    ||| |||||||||||||| |||| | |||||||||||    
T  6821003 taagtaaattaatatataagtagcgatgtcggtgtcc 6820967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 19294362 - 19294279
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtg 224  Q
    |||||||||||| ||||| |||| ||| ||||||||| |  |||||||||||| | |||||||||||| ||||||| |||||||    
T  19294362 taaataaattaacatatatgtagcggtatcggtgtcctatattttttacattagcggtgtcgatgtgttcgtgtcagtgtcgtg 19294279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 56982 - 56894
Alignment:
Q  144 ataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    ||||||||| ||||| |||| |||||  |||||| |  ||||||| |||| | |||||||||||||||| ||| |||||||||||||||    
T  56982 ataaattaacatatatgtagcggtgttcgtgtcctatattttttatattagcggtgtcgatgtgtccgtatcaatgtcgtgtcaggtgt 56894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 34011336 - 34011427
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    |||||||||||| ||||| |||  ||||||||||||| |  |||||||||||| | | ||||| |||||||||||| ||| |||||| ||||    
T  34011336 taaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggcgtcgacgtgtccgtgtcagtgttgtgtcacgtgt 34011427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 34013514 - 34013439
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 216  Q
    |||||||||||| ||||| |||  ||||||||||||| |  |||||||||||| | ||||||| ||||||||||||    
T  34013514 taaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtca 34013439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 14494518 - 14494698
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgctaa-gttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||||||  ||| ||||| || | |||||||||||||| |||  |||||| | ||||||  ||| | |||||||| | | | | ||||||     
T  14494518 aaaggtcaaatactatgatattttgttgtagaactttttctaatgaaataaattgctaaagatagatgtttatatatgtattttaattttcattttagac 14494617  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 215  Q
    | | | |||||||||||| ||||| |||| |||||||||||||    | |||||||||| | ||||||| |||||||||||    
T  14494618 cgtctttaaataaattaacatatatgtagcggtgtcggtgtcctgtatattttacattagcggtgtcgacgtgtccgtgtc 14494698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 17539994 - 17539919
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 216  Q
    |||||||||||| ||||| |||  ||||||||||||  |  |||||||||||||| |||||||  |||||||||||    
T  17539994 taaataaattaacatatatgtaatggtgtcggtgtcttatattttttacattaacggtgtcgacatgtccgtgtca 17539919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 6812480 - 6812415
Alignment:
Q  126 aatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacat 191  Q
    ||||||||| |||| ||| ||||||||||||||||||| | ||| ||||||| |  ||||||||||    
T  6812480 aatttagattttttataagtaaattaatatataggtagcgatgttggtgtcccattttttttacat 6812415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 1255869 - 1255941
Alignment:
Q  160 gtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    |||| ||||||||||||| |  ||||||||| |||||||||||| || || |||||| | |||| ||||||||    
T  1255869 gtagcggtgtcggtgtcccatattttttacactaacagtgtcgaagtatctgtgtcagtatcgtatcaggtgt 1255941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 36 - 228
Target Start/End: Complemental strand, 16426515 - 16426322
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||||||||||  |||||||| | ||| || |||||||||||  |||| ||||||||||||||||| |||||||||| |||||||||| ||    
T  16426515 aaaggccaaatactattgtaatttgttatagaacttgttttaatgaagtaaattgctcaagttagatgcatatgtatgtattttgattcttaatttatat 16426416  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 228  Q
    ||||| ||||||||||||||||||||||| |||||| |||||| | | ||||||||||||| |||| || |||||||||||| ||| |||||||    
T  16426415 cttttataaataaattaatatataggtagcggtgtcagtgtcctatgctttttacattaacggtgttgacgtgtccgtgtcagtgttgtgtcag 16426322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 3387738 - 3387610
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||||||| |||||||||||| | |||||| |||| || |||  || | |||||| |||||||||| |||||||||| ||| |||||||||    
T  3387738 aaaggtcaaatactattttatcttgttatagaactttttttaataaaataaattgttcaagttaaatgcatatgtatgtattttgattctcaatttagat 3387639  T
Q  135 cttttgtaaataaattaatatataggtag 163  Q
     |||| |||||||||||||||||| ||||    
T  3387638 attttataaataaattaatatataagtag 3387610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 32740824 - 32740740
Alignment:
Q  144 ataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 228  Q
    ||||||||| ||||| |||| |||||| |||||| |  ||||||||||||| ||||||||| || |||||||| |||||||||||    
T  32740824 ataaattaacatatatgtagtggtgtcagtgtcctatattttttacattaatagtgtcgatatgaccgtgtcagtgtcgtgtcag 32740740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 50127239 - 50127343
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| |||||||||||||||||||||||| | |||| | ||||||| |||  || | ||||||||||||||||| |||||||||| | ||| |||||||    
T  50127239 aaaggccaaatactattgtatcttgttatagaactttatttaatgaaataaattgttcaagttagatgcatatgtatgtattttgattattagtttagat 50127338  T
Q  135 ctttt 139  Q
     ||||    
T  50127339 atttt 50127343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 50127494 - 50127590
Alignment:
Q  136 ttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    |||| ||||||||||||||||||| ||| |||| || ||||| | ||||||||||||| |||| |||| |||||||  | | | |||||||||||||    
T  50127494 ttttataaataaattaatatatagatagcggtggcgatgtcctatgttttttacattagcagtatcgacgtgtccggattagtatcgtgtcaggtgt 50127590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 3955033 - 3954922
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||| || ||||||| || || | |||||| ||||||| |||  |||| |||||||||||| |||| |||||| ||| ||| ||||| |||    
T  3955033 aaaggtcaaatacgatcgtatcttattttagaactttttttaatgaaataaattgctcaagttagatgcacatgtatgtattctgattctcaattttgat 3954934  T
Q  135 cttttgtaaata 146  Q
    ||||| ||||||    
T  3954933 cttttataaata 3954922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 416 - 557
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| |||||||||||||||||||||||| |  ||||| ||||||| |||| |||| ||||||||||||||| | |||||||||| |||||||| ||||    
T  416 aaaggtcaaatactattgtatcttgttatagaattttttttaatgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagat 514  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtcc 177  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||    
T  515 cttttataaataaattaatatatagatagcggtgtcggtgtcc 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 41849080 - 41848922
Alignment:
Q  58 ttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatata 156  Q
    |||||||| |||||||| ||||||| |||  |||| ||||||||| ||||||| |||||||||| ||| ||||||||| |||| ||||||||||||||||    
T  41849080 ttgttatagacctttttttaatgaaataaagtgctcaagttagattcatatgtatgtattttgattctcaatttagatattttataaataaattaatata 41848981  T
Q  157 taggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 215  Q
    ||| ||| ||||||||||||| |  |||||||||||| | ||||||||||||| |||||    
T  41848980 tagatagcggtgtcggtgtcctatattttttacattagcggtgtcgatgtgtcagtgtc 41848922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 38783695 - 38783886
Alignment:
Q  42 caaatactattgtatcttgttatatacctttttctaatgaagtaatctgcta-agttagatgcatatgtttgtattttgactcttaatttagatcttttg 140  Q
    |||||| | ||||||||||||||| | |||||| ||||||| |||  |||   || |||||| |||||| |||||||||| ||| |||| |||| ||||     
T  38783695 caaatattgttgtatcttgttataaaactttttttaatgaaataaattgccctagatagatgtatatgtatgtattttgattctcaattcagatatttta 38783794  T
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    ||||||||||||||||||| |||  | ||||||||||   |  |||||||||| || ||||||||||||||||||| | |||||||||||||    
T  38783795 taaataaattaatatatagatagcagcgtcggtgtcctctgacttttacattagcaatgtcgatgtgtccgtgtcagtatcgtgtcaggtgt 38783886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 216
Target Start/End: Complemental strand, 17651342 - 17651161
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| |||||| ||||||| ||||||||| | ||| || ||||||| |||  |||| ||||||||||||||||| |||||||||  | |||||||||||    
T  17651342 aaaggccaaatattattgtaacttgttatagaacttcttgtaatgaaataaattgctcaagttagatgcatatgtatgtattttggtttttaatttagat 17651243  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 216  Q
    ||| | |||||||||||||||||||  || |||||| || ||| | |||||||| |||| |  |||||| |||| |||||||    
T  17651242 cttatataaataaattaatatatagccagcggtgtcagtatcctatgttttttatattagcgatgtcgacgtgttcgtgtca 17651161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 32200902 - 32201099
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||||||  ||||||||| || | |||||||||||||  |||  |||| ||||||||||  ||| | |||||||| | | | | ||||||     
T  32200902 aaaggtcaaatactatgatatcttgttgtagaactttttctaatgacataaattgctcaagttagatgtttatatatgtattttaattttcattttagac 32201001  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    | | | |||||||||||| |||||  ||  ||||||||||||| |  |||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  32201002 cgtctttaaataaattaacatatatttaatggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgt 32201099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 9929714 - 9929517
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||||||  ||||||||| || | |||||||||||||| |||  |||| || |||||||  ||| | |||||||| | | | | ||||||     
T  9929714 aaaggtcaaatactatgatatcttgttgtagaactttttctaatgaaataaattgctcaaattagatgtttatatatgtattttaattttcattttagac 9929615  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    | | | |||||||||||| ||||| ||||  |||| ||||||| |  |||||||||||| | ||||||| |||||||||||| |||||||||| ||||    
T  9929614 cgtctttaaataaattaacatatatgtagcagtgttggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaagtgt 9929517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 16661263 - 16661414
Alignment:
Q  43 aaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgt 141  Q
    |||||||||  ||||||||| || | |||||| |||| || |||  |||| ||||||||| || |||| |||||| ||| ||| |||||||||||||| |    
T  16661263 aaatactatcctatcttgttttagaactttttttaataaaataaattgctcaagttagatacacatgtatgtattctgattctcaatttagatcttttat 16661362  T
Q  142 aaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatta 193  Q
    | || |||||||||||| |||| ||| ||||||||| | |||| ||||||||    
T  16661363 acatgaattaatatatatgtagcggtatcggtgtccaatgtttattacatta 16661414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 18724896 - 18724959
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccga-ggttttttacattaacagtgtcga 203  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||||||||| | |||||||    
T  18724896 taaataaattaatatataggtagcggtgtcggtgtcctatggttttttacattatcggtgtcga 18724959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 27004012 - 27003952
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtc 201  Q
    |||||||||||| ||||| |||| ||||||||||||| |  ||||||||||||||||||||    
T  27004012 taaataaattaacatatacgtagcggtgtcggtgtcctatattttttacattaacagtgtc 27003952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 34409767 - 34409843
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggtttt-ttacattaacagtgtcgatgtgtccgtgtca 216  Q
    ||||||||||||||||||  ||  ||||||||||||| || |||| |||||||| | ||||||||||||||||||||    
T  34409767 taaataaattaatatatatctaatggtgtcggtgtcctagatttttttacattagcggtgtcgatgtgtccgtgtca 34409843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 4748269 - 4748318
Alignment:
Q  166 gtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 215  Q
    |||||||||||| |  |||||||||||| | |||||||||||||||||||    
T  4748269 gtgtcggtgtcctatattttttacattagcggtgtcgatgtgtccgtgtc 4748318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 27401906 - 27401709
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||| |||||||||||||||||||| |||||| ||||||| |||  |||| |||||||||||| |||| | |||||||| ||| |||| |||     
T  27401906 aaaggccaaattctattgtatcttgttatataactttttttaatgaaataaattgctcaagttagatgcagatgtatatattttgattctcaattgagac 27401807  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
     |||| ||||||||||||||||||| ||| ||| | || |||| | ||||||||||||| | |||| |  |||||||||||| |||| | ||||||||    
T  27401806 attttataaataaattaatatatagatagcggtattggcgtcctatgttttttacattagcggtgttggcgtgtccgtgtcagtgtcctatcaggtgt 27401709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 28867364 - 28867194
Alignment:
Q  43 aaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgt 141  Q
    |||| ||||| |||||||| ||||| |||||| ||||||| |||  | || ||||||||||||||| | |||||||||| ||| |||||| || |||| |    
T  28867364 aaatgctattatatcttgtgatatatctttttttaatgaaataaattacttaagttagatgcatatatatgtattttgattctcaatttaaatgttttat 28867265  T
Q  142 aaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgt 212  Q
    |||||||||||||||||| |||  |||| ||||||  | ||||| |||||||   ||||||||||||||||    
T  28867264 aaataaattaatatatagatagtagtgttggtgtcttatgttttatacattagttgtgtcgatgtgtccgt 28867194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 15850553 - 15850732
Alignment:
Q  54 tatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaa 152  Q
    ||||||||| |||| |||||||||||||| |||| |||| || |||||| | ||| | |||||||||| | | | ||||||   | | ||||||||||||    
T  15850553 tatcttgttttataactttttctaatgaaataatttgctcaaattagatacttatatatgtattttgattttcattttagactatctataaataaattaa 15850652  T
Q  153 tatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    ||||||  ||  ||||||||||||| |  ||||||||| |||||||||||| |||||| | ||| |||||||||||||||    
T  15850653 tatatacataatggtgtcggtgtcctatattttttacactaacagtgtcgaagtgtccatatcagtgtcgtgtcaggtgt 15850732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 3159914 - 3159736
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| |||||||||||||| ||||||||| |||||||| ||||||| |||  |||| ||||||||| |||||         |||| ||| |||||||||    
T  3159914 aaaggccaaatactattgtaacttgttatagacctttttttaatgaaataaattgctcaagttagatacatat---------ttgattctcaatttagat 3159824  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcg 222  Q
    ||||  ||||||||||| |||| ||||||  |||||||||||| | ||||||||||||| | ||||  | ||||| |||||| |||||    
T  3159823 ctttcataaataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttaacgtgtcagtgtcagtgtcg 3159736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 28869927 - 28869758
Alignment:
Q  43 aaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgt 141  Q
    |||| ||||| |||||||| ||||| |||||| ||||||| |||  |  | ||||||||||||||||| |||||||||| ||| |||||| || |||| |    
T  28869927 aaatgctattatatcttgtgatatatctttttttaatgaaataaattatttaagttagatgcatatgtatgtattttgattctcaatttaaatattttat 28869828  T
Q  142 aaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgt 212  Q
    |||||||||||||||||| |||  ||||  |||||  | | ||||||| ||| | ||||||||||||||||    
T  28869827 aaataaattaatatatagatagtagtgtttgtgtcttatg-tttttacgttagctgtgtcgatgtgtccgt 28869758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 18393630 - 18393758
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||||||| |||||||||||| | |||||| |||| || |||  || | |||||| |||||||||| |||||| ||| ||| |||||||||    
T  18393630 aaaggtcaaatactattttatcttgttataaaactttttttaataaaataaattgttcaagttaaatgcatatgtatgtattatgattctcaatttagat 18393729  T
Q  135 cttttgtaaataaattaatatataggtag 163  Q
     |||| ||| |||||||||||||| ||||    
T  18393730 attttataagtaaattaatatataagtag 18393758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 13097468 - 13097405
Alignment:
Q  94 agttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatat 157  Q
    |||||||||||||||| |||||||||| ||| ||||||||| |||| |||||||||||||||||    
T  13097468 agttagatgcatatgtatgtattttgattctcaatttagatattttataaataaattaatatat 13097405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 2875458 - 2875532
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgt 109  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||| |||  |||| ||||||||| |||||||    
T  2875458 aaaggccaaatactattgtatcttgttataaacctttttttaatgaactaaattgctcaagttagatacatatgt 2875532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 2889813 - 2889859
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaa 82  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||||    
T  2889813 aaaggccaaatactattgtatcttgttatagacctttttttaatgaa 2889859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 3145322 - 3145276
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaa 82  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||||    
T  3145322 aaaggccaaatactattgtatcttgttatagacctttttttaatgaa 3145276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 18603242 - 18603317
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 216  Q
    |||||||||||| || || ||||||||| |||||||| |  ||||||||| |||| ||||||| ||||| ||||||    
T  18603242 taaataaattaacatgtatgtagaggtgccggtgtcctatattttttacactaacggtgtcgaagtgtctgtgtca 18603317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 209272 - 209151
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgactcttaatttagatc 135  Q
    ||||| |||||| | |||||| |||||||| | |||||| ||||||| |||  ||||| ||||||||||||||| |||||||||| ||| |||||||||     
T  209272 aaaggccaaatattgttgtattttgttatagaactttttttaatgaaataaattgcta-gttagatgcatatgtatgtattttgattctcaatttagata 209174  T
Q  136 ttttgtaaataaattaatatata 158  Q
    |||| ||||||||||||||||||    
T  209173 ttttataaataaattaatatata 209151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 32593819 - 32593718
Alignment:
Q  92 taagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacat 191  Q
    |||||||||||||||||| |||||||||| || ||||||||||| ||| ||||||||||| |||| |||||| |||||| |||||| | | |||||||||    
T  32593819 taagttagatgcatatgtgtgtattttgattcataatttagatcatttataaataaattagtatacaggtagcggtgtcagtgtcctatggtttttacat 32593720  T
Q  192 ta 193  Q
    ||    
T  32593719 ta 32593718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 54305633 - 54305542
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    |||||||||||| ||||| |||| ||||||||||||| |   ||||||||||| |  |||||| |||||||||||| ||| |||||||||||    
T  54305633 taaataaattaacatatatgtagcggtgtcggtgtcctataatttttacattagcgatgtcgacgtgtccgtgtcagtgttgtgtcaggtgt 54305542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 55680714 - 55680627
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 228  Q
    |||||||||||| ||||| |||  ||||||||||||| |  |||||||||||| | ||||||| |||||||| ||| |||||||||||    
T  55680714 taaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtatcagtgtcgtgtcag 55680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 658632 - 658697
Alignment:
Q  167 tgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    ||||||||||| || |||||||||||| |||||| || || ||||||||| ||||||||| |||||    
T  658632 tgtcggtgtcctagattttttacattagcagtgttgacgtatccgtgtcagtgtcgtgtcgggtgt 658697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 11809357 - 11809507
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||||||||||||||||||||||  ||||| ||||||| |||  |||| |||||||| |||||||| |||||||||  ||| ||||||||     
T  11809357 aaaggccaaatactattgtatcttgttatataaattttt-taatgaaataaattgctcaagttagaagcatatgtatgtattttgcttctaaatttaga- 11809454  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatta 193  Q
          |||||||||||||||||||||||  |||||||||||  | | |||||||||||    
T  11809455 ------taaataaattaatatataggtagcagtgtcggtgtcttatgatttttacatta 11809507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 27993973 - 27993866
Alignment:
Q  48 ctattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaata 146  Q
    |||||||||||||||||| | |||| | ||||||| |||  |||| |||||| |||||||||| |||||||||| ||||| |||| ||||||| ||||||    
T  27993973 ctattgtatcttgttatagaactttatttaatgaaataaattgctcaagttaaatgcatatgtatgtattttgattcttagtttatatcttttataaata 27993874  T
Q  147 aattaata 154  Q
    ||||||||    
T  27993873 aattaata 27993866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 9730062 - 9730144
Alignment:
Q  111 tgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatta 193  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||||||| |||||| |||| | |  ||||||||||||    
T  9730062 tgtattttggttcttaatttagatcttttataaataaattaatatataggtagcggtgtcagtgttctatattttttacatta 9730144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 27616302 - 27616210
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgta 233  Q
    |||||||||||| ||| | |||| |||||||||||||    |||||||||||||| |||||||  ||||||||||| | ||||||||||||||    
T  27616302 taaataaattaacatacatgtagcggtgtcggtgtcctgtattttttacattaacggtgtcgacatgtccgtgtcagtatcgtgtcaggtgta 27616210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 43837406 - 43837497
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    |||||||||||||||||  |||| ||||||  |||||   ||||||||||||| ||||||||| |||||||||||| ||| |||| ||||||    
T  43837406 taaataaattaatatatgtgtagtggtgtcaatgtcctgagttttttacattagcagtgtcgaggtgtccgtgtcagtgttgtgtaaggtgt 43837497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 5741657 - 5741583
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 215  Q
    ||||| |||||||||||  |||| ||||||||||| | | |||||||||||||||||||| |||||||| |||||    
T  5741657 taaattaattaatatatgtgtagcggtgtcggtgttctaagttttttacattaacagtgttgatgtgtcagtgtc 5741583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 11812686 - 11812759
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgt 214  Q
    |||||||||||||||||||||||  |||||||||||| | ||||||||||||| | ||||| | ||||| ||||    
T  11812686 taaataaattaatatataggtagctgtgtcggtgtcctatgttttttacattagcggtgtcaacgtgtctgtgt 11812759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 11816930 - 11817064
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||| ||||||||||||||||||  ||||| ||||||| |||  |||| | ||||||||| ||||| |||||||||  ||| ||||||||     
T  11816930 aaaggtcaaatacgattgtatcttgttatataaattttt-taatgaaataaattgctcatgttagatgcttatgtatgtattttgcttctcaatttaga- 11817027  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtcc 177  Q
          ||||||||||||||||||||||| |  ||||||||||    
T  11817028 ------taaataaattaatatataggtagcgacgtcggtgtcc 11817064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 11820706 - 11820752
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggtttttt 187  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||    
T  11820706 taaataaattaatatataggtagtggtgtcggtgtcctatgtttttt 11820752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 37338842 - 37338984
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| ||||||||||  |||||||||  ||| | |||||||||||| |||| |||| ||||||||||| ||| | |||||||||| | | ||||||||     
T  37338842 aaaggtcaaatactatgatatcttgtttgataacattttctaatgaaataatttgctcaagttagatgcttatatatgtattttgattttcaatttagac 37338941  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtcc 177  Q
      | | |||||||||||| ||||| |||  |||| ||||||||    
T  37338942 tgtctataaataaattaacatatatgtaacggtgccggtgtcc 37338984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 45216141 - 45216191
Alignment:
Q  182 ttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    |||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  45216141 ttttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgt 45216191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 11810994 - 11811077
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttg 119  Q
    ||||| |||||| ||||||||||||||| |||  ||||| ||||||| |||  |||| |||||||| |||||||| |||||||||    
T  11810994 aaaggtcaaatattattgtatcttgttagataaattttt-taatgaaataaattgctcaagttagaggcatatgtatgtattttg 11811077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 11814584 - 11814636
Alignment:
Q  149 ttaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtc 201  Q
    ||||||||||||||   |||||||||||| | ||||||||||||||| |||||    
T  11814584 ttaatatataggtaacagtgtcggtgtcctatgttttttacattaacggtgtc 11814636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 48598292 - 48598252
Alignment:
Q  130 tagatcttttgtaaataaattaatatataggtagaggtgtc 170  Q
    |||||||||| ||||||||||||||||||| ||| ||||||    
T  48598292 tagatcttttataaataaattaatatatagatagtggtgtc 48598252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 4112040 - 4111966
Alignment:
Q  95 gttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgt 169  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||| || ||||||||||||||| |||| |||||    
T  4112040 gttagatgcatatgtatgtattttgattctcaatttagatcttttatatataaattaatatataagtagcggtgt 4111966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 215
Target Start/End: Original strand, 32676732 - 32676893
Alignment:
Q  54 tatcttgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaat 153  Q
    ||||||||| |||| |||||||||||||| |||  |||| | |||||||| ||||| |||||||||| | | | |||||| | | |  |||||||||||     
T  32676732 tatcttgttttataactttttctaatgaaataaattgctcaattagatgcttatgtatgtattttgattttcattttagaccgtctaaaaataaattaac 32676831  T
Q  154 atataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 215  Q
    ||||| ||||  | |||||||||| |  |||||||||||| | ||||||| ||||| |||||    
T  32676832 atatatgtagcagggtcggtgtcctattttttttacattagcggtgtcgacgtgtcagtgtc 32676893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 40837889 - 40837692
Alignment:
Q  36 aaagggcaaatactattgtatcttgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagat 134  Q
    ||||| |||||||||   ||||||||| || | |||||||||||||| |||| |||| ||||||||||| ||| | |||||||||| | | | ||||||     
T  40837889 aaaggtcaaatactacaatatcttgttttagaactttttctaatgaaataatttgctcaagttagatgcttatatatgtattttgattttcattttagac 40837790  T
Q  135 cttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    | | | |||||||||||| |||||  ||| |||||| |||||  |  ||||||||| || | || || | |||||||||||| | |||||||||||||    
T  40837789 cgtatataaataaattaacatatatctagcggtgtcagtgtcttatattttttacactagcggtatcaaagtgtccgtgtcattatcgtgtcaggtgt 40837692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 41815782 - 41815871
Alignment:
Q  126 aatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 216  Q
    ||||| |||||||| |||||||||||||||||| |||| ||||||||||||| |  |||||||||||| | ||||| |  |||||||||||    
T  41815782 aatttggatcttttataaataaattaatatatatgtagcggtgtcggtgtccta-tttttttacattagcggtgtctaattgtccgtgtca 41815871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 43922128 - 43922217
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggt 230  Q
    |||||||||||| || || |||||||||||||||||| |  ||||||||| || | ||||||| |||||||||||| |||||||||||||    
T  43922128 taaataaattaacatgtatgtagaggtgtcggtgtcctatattttttacactagcggtgtcgaagtgtccgtgtcagtgtcgtgtcaggt 43922217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 26565288 - 26565197
Alignment:
Q  141 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 232  Q
    |||||||||||| ||||| |||  |||||| ||||||    |||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  26565288 taaataaattaacatatatgtaacggtgtcagtgtcctgtattttttacattagcggtgtcgaagtgtccgtgtcagtgtcgtgtcaggtgt 26565197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 21408973 - 21409118
Alignment:
Q  70 tttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtg 168  Q
    ||||||||||||| |||  |||| || |||||| | ||| |||||||||||| | | | |||||| | | | |||||||||||| ||||| |||| ||||    
T  21408973 tttttctaatgaaataacttgctcaaattagattcttatatttgtattttgattttcattttagaccgtatataaataaattaacatatatgtagcggtg 21409072  T
Q  169 tcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgt 214  Q
    || || ||| |  |||||||||||||| ||||| ||||||| ||||    
T  21409073 tcagtatcctatattttttacattaacggtgtcaatgtgtctgtgt 21409118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 11410733 - 11410624
Alignment:
Q  69 ctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggt 167  Q
    |||||||||||||| |||  |||| ||||||||||| ||  | |||||||||| | | | |||||| | | | |||||||||||| ||||| |||| |||    
T  11410733 ctttttctaatgaaataacttgctcaagttagatgcttaaatatgtattttgattttcattttagaccgtatataaataaattaacatatatgtagcggt 11410634  T
Q  168 gtcggtgtcc 177  Q
    ||||||||||    
T  11410633 gtcggtgtcc 11410624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 12891 - 12788
Alignment:
Q  105 tatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgat 204  Q
    |||||||||||||||| | | | |||||  ||| |||||||||||||||||||| |||| |||||||||||||    |||||||||||| |||||||| |    
T  12891 tatgtttgtattttgattttcattttaggccttctgtaaataaattaatatatatgtagcggtgtcggtgtcctgtattttttacattagcagtgtcggt 12792  T
Q  205 gtgt 208  Q
    ||||    
T  12791 gtgt 12788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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