View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0787_low_22 (Length: 310)

Name: NF0787_low_22
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0787_low_22
NF0787_low_22
[»] chr3 (4 HSPs)
chr3 (93-247)||(1637180-1637334)
chr3 (111-247)||(11171840-11171978)
chr3 (93-181)||(11161797-11161887)
chr3 (169-247)||(51811113-51811190)
[»] chr2 (2 HSPs)
chr2 (94-158)||(32980483-32980547)
chr2 (180-247)||(26616044-26616111)
[»] chr5 (1 HSPs)
chr5 (182-246)||(24211554-24211618)
[»] chr1 (1 HSPs)
chr1 (180-247)||(34003229-34003296)
[»] chr8 (1 HSPs)
chr8 (180-224)||(14189628-14189672)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 1637334 - 1637180
Alignment:
Q  93 gtgctcagatcaccgaccaaagcagcgtaagttaagtcacgccaccgaccaatggagcgtgagttatcacactgacttataacatgtgtgagttaactca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  1637334 gtgctcagatcaccgaccaaagcagcgtaagttaagtcacgccaccgaccaaaagagcgtgagttatcacactgacttataacatgtgtgagttaactca 1637235  T
Q  193 cactgaaagtacctatcataacttaagtcacgtgagagtactttcgtccattcag 247  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  1637234 cactgaaagtacctatcatgacttaagtcacgtgagagttctttcgtccattcag 1637180  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 11171978 - 11171840
Alignment:
Q  111 aaagcagcgtaagttaagtcacgccaccgaccaatggagcgtgagtta--tcacactgacttataacatgtgtgagttaactcacactgaaagtacctat 208  Q
    |||||||||| |||||||||||||||||| |||| | || || |||||  | || ||| |||||||||   ||||||||||||||  ||||||||||||     
T  11171978 aaagcagcgtgagttaagtcacgccaccggccaacgtagtgtaagttaagttacgctggcttataacacacgtgagttaactcacgttgaaagtacctag 11171879  T
Q  209 cataacttaagtcacgtgagagtactttcgtccattcag 247  Q
    | | ||||||||| || ||| || |||||||||||||||    
T  11171878 cgtgacttaagtcgcgcgagggtgctttcgtccattcag 11171840  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 11161887 - 11161797
Alignment:
Q  93 gtgctcagatcaccgaccaaagcagcgtaagttaagtcacgccaccgaccaatggagcgtgagtta--tcacactgacttataacatgtgt 181  Q
    ||||||||| ||||  |||||||||||| |||||||||||||||||| ||||   ||||| |||||  |||| ||||||||||||| ||||    
T  11161887 gtgctcagaccaccagccaaagcagcgtgagttaagtcacgccaccggccaaactagcgtcagttaagtcacgctgacttataacacgtgt 11161797  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 51811190 - 51811113
Alignment:
Q  169 ttataacatgtgtgagttaactcacactgaaagtacctatcataacttaagtcacgtgagagtactttcgtccattcag 247  Q
    ||||||| ||||||||||||| ||| ||||||||||| | | | |||||||||||| | | ||||||||||||||||||    
T  51811190 ttataacttgtgtgagttaacacacgctgaaagtaccaagcgtgacttaagtcacgcg-gggtactttcgtccattcag 51811113  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 32980547 - 32980483
Alignment:
Q  94 tgctcagatcaccgaccaaagcagcgtaagttaagtcacgccaccgaccaatggagcgtgagtta 158  Q
    |||||||| ||||| |||||||||||| ||||||||||||||| ||||||| | ||| |||||||    
T  32980547 tgctcagaccaccggccaaagcagcgtgagttaagtcacgccatcgaccaaagaagcatgagtta 32980483  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 26616111 - 26616044
Alignment:
Q  180 gtgagttaactcacactgaaagtacctatcataacttaagtcacgtgagagtactttcgtccattcag 247  Q
    ||||||||||||||  |||||||||||| | ||||||||||||||  || ||||||| ||||||||||    
T  26616111 gtgagttaactcacggtgaaagtacctagcgtaacttaagtcacgcaagggtacttttgtccattcag 26616044  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 24211554 - 24211618
Alignment:
Q  182 gagttaactcacactgaaagtacctatcataacttaagtcacgtgagagtactttcgtccattca 246  Q
    |||||||||||| ||||||||||| | | | |||||||||||| ||  |||||||||||||||||    
T  24211554 gagttaactcacgctgaaagtaccgagcgtgacttaagtcacgcgaaggtactttcgtccattca 24211618  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 34003229 - 34003296
Alignment:
Q  180 gtgagttaactcacactgaaagtacctatcataacttaagtcacgt-gagagtactttcgtccattcag 247  Q
    |||||||||||||  |||||||||||||  || ||||||||||||| ||| ||||||||||||||||||    
T  34003229 gtgagttaactcatgctgaaagtacctagaatgacttaagtcacgtagag-gtactttcgtccattcag 34003296  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 14189672 - 14189628
Alignment:
Q  180 gtgagttaactcacactgaaagtacctatcataacttaagtcacg 224  Q
    |||||||||||||| ||||||||| | ||||| ||||||||||||    
T  14189672 gtgagttaactcacgctgaaagtatcgatcatgacttaagtcacg 14189628  T

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