View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0787_low_27 (Length: 253)

Name: NF0787_low_27
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0787_low_27
NF0787_low_27
[»] chr7 (2 HSPs)
chr7 (31-253)||(23473233-23473454)
chr7 (31-253)||(23439837-23440056)
[»] chr4 (2 HSPs)
chr4 (193-244)||(20919578-20919629)
chr4 (193-243)||(36729306-36729356)
[»] chr3 (1 HSPs)
chr3 (195-238)||(43668655-43668698)
[»] chr2 (3 HSPs)
chr2 (195-253)||(21494704-21494761)
chr2 (195-240)||(4104833-4104878)
chr2 (198-251)||(22285266-22285319)
[»] scaffold0291 (1 HSPs)
scaffold0291 (193-238)||(9926-9971)
[»] scaffold0279 (1 HSPs)
scaffold0279 (201-238)||(20012-20049)
[»] chr6 (1 HSPs)
chr6 (195-239)||(24084890-24084934)
[»] chr5 (1 HSPs)
chr5 (192-240)||(38834089-38834137)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 23473454 - 23473233
Alignment:
Q  31 agtttaggaatcatttgagtataacgaaggatccgagtagttttcttttctaagttgtgtagcaactagcaaagagtatttttagcttctctgttgttga 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23473454 agtttaggaatcatttgagtataacgaaggatccgagtagttttcttttctaagttgtgtagcaattagcaaagagtatttttagcttctctgttgttga 23473355  T
Q  131 gtagctcacaagtcacgagtgatataatttgggagcatacaatgtatgtatgtatgtatgcttaaagtgtattttttacaccttaatttttaaaaagttg 230  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || ||||||||| | |||||||||||||||||||||    
T  23473354 gtagctcacaagtcacgagtgatataatttcggagcatacaatgtatgtatgtgtgtatgctt-aactgtatttttgataccttaatttttaaaaagttg 23473256  T
Q  231 tgattttgactccttaacaaaaa 253  Q
    ||||||||  |||||||||||||    
T  23473255 tgattttggatccttaacaaaaa 23473233  T

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Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 23440056 - 23439837
Alignment:
Q  31 agtttaggaatcatttgagtataacgaaggatccgagtagttttcttttctaagttgtgtagcaactagcaaagagtatttttagcttctctgttgttga 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  23440056 agtttaggaatcatttgagtataacgaaggatccgagtagttttcttttctaagttgtgtagcaactagcaaagagtatttttaactcctatgttgttga 23439957  T
Q  131 gtagctcac-aagtcacgagtgatataatttgggagcatacaatgtatgtatgtatgtatgcttaaagtgtattttttacaccttaatttttaaaaagtt 229  Q
    ||||||||| ||||||||||||||||||||||||||||||||     ||||||||||||||||||| |||||| |||||||||||||||||| |||| ||    
T  23439956 gtagctcactaagtcacgagtgatataatttgggagcataca----gtgtatgtatgtatgcttaatgtgtatattttacaccttaattttttaaaaatt 23439861  T
Q  230 gtgattttgactccttaacaaaaa 253  Q
    ||||||||| ||||||||||||||    
T  23439860 gtgattttggctccttaacaaaaa 23439837  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 20919629 - 20919578
Alignment:
Q  193 taaagtgtattttttacaccttaatttttaaaaagttgtgattttgactcct 244  Q
    ||||||| |||||| || |||||| ||||||||||||| |||||||||||||    
T  20919629 taaagtgcatttttcaccccttaagttttaaaaagttgcgattttgactcct 20919578  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 36729356 - 36729306
Alignment:
Q  193 taaagtgtattttttacaccttaatttttaaaaagttgtgattttgactcc 243  Q
    ||||||| |||||| || |||||| ||||||||||||| ||||||||||||    
T  36729356 taaagtgcatttttcaccccttaagttttaaaaagttgcgattttgactcc 36729306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 43668698 - 43668655
Alignment:
Q  195 aagtgtattttttacaccttaatttttaaaaagttgtgattttg 238  Q
    ||||| |||||||||||||||| ||||||||| |||||||||||    
T  43668698 aagtgcattttttacaccttaacttttaaaaatttgtgattttg 43668655  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 21494761 - 21494704
Alignment:
Q  195 aagtgtattttttacaccttaatttttaaaaagttgtgattttgactccttaacaaaaa 253  Q
    ||||| |||||| |||| |||| |||||||||||||||||||||||| | |||||||||    
T  21494761 aagtgcatttttgacac-ttaacttttaaaaagttgtgattttgacttcctaacaaaaa 21494704  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 4104833 - 4104878
Alignment:
Q  195 aagtgtattttttacaccttaatttttaaaaagttgtgattttgac 240  Q
    ||||| |||||| ||||||||| ||||||||| |||||||||||||    
T  4104833 aagtgcatttttgacaccttaacttttaaaaaattgtgattttgac 4104878  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 22285266 - 22285319
Alignment:
Q  198 tgtattttttacaccttaatttttaaaaagttgtgattttgactccttaacaaa 251  Q
    |||||||||||| |||||| |||| ||||||||| ||||||  |||||||||||    
T  22285266 tgtattttttaccccttaaatttttaaaagttgtaattttgcttccttaacaaa 22285319  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 9926 - 9971
Alignment:
Q  193 taaagtgtattttttacaccttaatttttaaaaagttgtgattttg 238  Q
    ||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  9926 taaagtgcattttttaccccttaagttttaaatagttgtgattttg 9971  T

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Target: scaffold0279 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 20049 - 20012
Alignment:
Q  201 attttttacaccttaatttttaaaaagttgtgattttg 238  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  20049 attttttaccctttaatttttaaaaagttgtgattttg 20012  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 24084890 - 24084934
Alignment:
Q  195 aagtgtattttttacaccttaatttttaaaaagttgtgattttga 239  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||||    
T  24084890 aagtgtatttttgacatcttaacttttaaaaagttgcgattttga 24084934  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 38834089 - 38834137
Alignment:
Q  192 ttaaagtgtattttttacaccttaatttttaaaaagttgtgattttgac 240  Q
    |||||||| ||||||| | |||||| ||||||||||||| |||||||||    
T  38834089 ttaaagtgcatttttttccccttaacttttaaaaagttgcgattttgac 38834137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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