View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_28 (Length: 251)
Name: NF0787_low_28
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 6088859 - 6088626
Alignment:
| Q |
1 |
caaaatgcaggatgatacattgacaggaatagattcttcagttgacattgctacagaggagaacttgaagaaactgtgccaaattggcgagaacttgtta |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||| |
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| T |
6088859 |
caaaatgcaggatgatacattgacaggaatcgattcttcagttgacattgctacagaggagaacttgaagaaactgtgccaaattggtgaaaatttatta |
6088760 |
T |
|
| Q |
101 |
aagaaaccggtctctagagtcaatttggaaaatggccactttgagccactgacaaatggagaaaccaatgaagatgctctcaagaggtaattaagattaa |
200 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
6088759 |
aagaaaccggtctctagagtcaatttagaaaatggtcactttgagccactgacaaatggagaaaccaatgaagaagctctcaagaggtaattaagataaa |
6088660 |
T |
|
| Q |
201 |
ccagtagtgatggtacattttaattaccactcaa |
234 |
Q |
| |
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||||| || ||||||||||||||||||||||| |
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| T |
6088659 |
ttagtagagacggtacattttaattaccactcaa |
6088626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 46678056 - 46678189
Alignment:
| Q |
2 |
aaaatgcaggatgatacattgacaggaatagattcttcagttgacattgctacagaggagaacttgaagaaactgtgccaaattggcgagaacttgttaa |
101 |
Q |
| |
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||||||||||||||||||||||| || | ||||||||| ||||| ||| | ||| | ||||| || | ||||| ||||||||||| || | ||||| | |
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| T |
46678056 |
aaaatgcaggatgatacattgaccggtacagattcttcggttgatatttccacaaaagagaatttagaaaaactttgccaaattggtgacagattgttga |
46678155 |
T |
|
| Q |
102 |
agaaaccggtctctagagtcaatttggaaaatgg |
135 |
Q |
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||||||| || |||| |||||||| || ||||| |
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| T |
46678156 |
agaaaccagtatctaaggtcaatttagagaatgg |
46678189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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