View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0787_low_3 (Length: 606)

Name: NF0787_low_3
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0787_low_3
NF0787_low_3
[»] chr7 (7 HSPs)
chr7 (257-368)||(27324511-27324622)
chr7 (179-234)||(9942602-9942657)
chr7 (178-235)||(28782014-28782071)
chr7 (180-235)||(9948976-9949031)
chr7 (178-235)||(11621408-11621465)
chr7 (178-235)||(40871301-40871358)
chr7 (317-361)||(40186794-40186838)
[»] chr6 (5 HSPs)
chr6 (257-368)||(3500745-3500856)
chr6 (179-235)||(12912247-12912303)
chr6 (179-233)||(165556-165610)
chr6 (178-226)||(18972622-18972670)
chr6 (178-226)||(24393954-24394002)
[»] chr4 (7 HSPs)
chr4 (257-368)||(28359306-28359417)
chr4 (178-231)||(37870649-37870702)
chr4 (178-234)||(43499341-43499397)
chr4 (178-233)||(36651742-36651797)
chr4 (316-358)||(50344859-50344901)
chr4 (178-231)||(7743616-7743669)
chr4 (178-234)||(39059723-39059779)
[»] chr1 (8 HSPs)
chr1 (30-97)||(14255367-14255435)
chr1 (178-235)||(4532086-4532143)
chr1 (178-234)||(33766400-33766456)
chr1 (178-235)||(34549407-34549464)
chr1 (178-235)||(45432373-45432430)
chr1 (178-234)||(51534478-51534534)
chr1 (178-235)||(19227886-19227943)
chr1 (178-226)||(33936477-33936525)
[»] chr8 (3 HSPs)
chr8 (182-235)||(13089765-13089818)
chr8 (178-234)||(45547944-45548000)
chr8 (178-235)||(4034300-4034357)
[»] chr5 (5 HSPs)
chr5 (178-235)||(22639603-22639660)
chr5 (178-234)||(39143220-39143276)
chr5 (310-361)||(27771336-27771387)
chr5 (178-226)||(926769-926817)
chr5 (178-234)||(6537120-6537176)
[»] scaffold0300 (1 HSPs)
scaffold0300 (179-235)||(9622-9678)
[»] chr2 (7 HSPs)
chr2 (178-226)||(37648009-37648057)
chr2 (178-234)||(2702258-2702314)
chr2 (179-235)||(12410832-12410888)
chr2 (179-235)||(12422892-12422948)
chr2 (309-368)||(5609207-5609266)
chr2 (179-234)||(27271685-27271740)
chr2 (179-235)||(6764465-6764521)
[»] scaffold0041 (1 HSPs)
scaffold0041 (178-235)||(94924-94981)
[»] scaffold0037 (1 HSPs)
scaffold0037 (179-226)||(1022-1069)
[»] scaffold0074 (1 HSPs)
scaffold0074 (178-226)||(23838-23886)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 257 - 368
Target Start/End: Original strand, 27324511 - 27324622
Alignment:
Q  257 ctaacgtgaattaaaatcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgta 356  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||    
T  27324511 ctaacgtgaattaaaatcacgtaccattcataagagtgggaaggaaatgagtaaggataattttggtattatgaataaattttaattgaatttgggtgta 27324610  T
Q  357 acttgatatttt 368  Q
    ||||||||||||    
T  27324611 acttgatatttt 27324622  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 9942657 - 9942602
Alignment:
Q  179 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  9942657 cactccttgtgctgaaatctccagactttcagtattttaatccattttagtttctt 9942602  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 28782071 - 28782014
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  28782071 gcactccttgtgctgaaatctccaggctttcagtattttaatccattttagtttcttc 28782014  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 9948976 - 9949031
Alignment:
Q  180 actccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||||||||||||||||| ||| |||| |||||| ||||||||||| ||||||||    
T  9948976 actccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 9949031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 11621408 - 11621465
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||| | ||||||    
T  11621408 gcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttcttc 11621465  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 40871358 - 40871301
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||||||||||||||||||||||| |||||| || | ||||||||||| | ||||||    
T  40871358 gcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttcttc 40871301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 40186794 - 40186838
Alignment:
Q  317 ttttggtattatgaataaattttaattaaatttggatgtaacttg 361  Q
    |||||||||||| |  ||||||||| |||||||||||||||||||    
T  40186794 ttttggtattattataaaattttaaataaatttggatgtaacttg 40186838  T

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Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 257 - 368
Target Start/End: Original strand, 3500745 - 3500856
Alignment:
Q  257 ctaacgtgaattaaaatcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgta 356  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||    
T  3500745 ctaacgtgaattaaaatcatgtatcattcataagagtgggaaggaaatgagtaaggataattttgttattatgaataaattttaattgaatttgggtgta 3500844  T
Q  357 acttgatatttt 368  Q
    ||||||||||||    
T  3500845 acttgatatttt 3500856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 12912303 - 12912247
Alignment:
Q  179 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  12912303 cactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 12912247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 165556 - 165610
Alignment:
Q  179 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttct 233  Q
    |||| |||||||||||||||| ||||||||| || | ||||||||||| ||||||    
T  165556 cacttcttgtgctgaaatctcaagacttttaataatataatccattttagtttct 165610  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 18972670 - 18972622
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 226  Q
    |||||||||||||||||||||| || ||||||||| | ||||| |||||    
T  18972670 gcactccttgtgctgaaatctcaaggcttttagtaatataatcaatttt 18972622  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 24393954 - 24394002
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 226  Q
    |||||||||||||||||||||| || ||||||||| | ||||| |||||    
T  24393954 gcactccttgtgctgaaatctcaaggcttttagtaatataatcaatttt 24394002  T

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Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 257 - 368
Target Start/End: Original strand, 28359306 - 28359417
Alignment:
Q  257 ctaacgtgaattaaaatcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgta 356  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| | ||||||| ||||    
T  28359306 ctaacgtgaattaaaatcacgtatcattcataagagtgggaaggaaatgagtaaggataattttgatattatgaataaattttaaatgaatttgggtgta 28359405  T
Q  357 acttgatatttt 368  Q
    ||||||||||||    
T  28359406 acttgatatttt 28359417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 37870702 - 37870649
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgttt 231  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||| ||||    
T  37870702 gcactccttgtgctgaaatctccagactttgagtaatataatccattttagttt 37870649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 43499341 - 43499397
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||| |||||||    
T  43499341 gcactccttgtgctgaaatctccaagctttcagtattttaatccattttagtttctt 43499397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 36651797 - 36651742
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttct 233  Q
    |||||||||||||||||||||||| |||||   |||| ||||||||||| ||||||    
T  36651797 gcactccttgtgctgaaatctccaaactttcgatattttaatccattttagtttct 36651742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 50344859 - 50344901
Alignment:
Q  316 attttggtattatgaataaattttaattaaatttggatgtaac 358  Q
    |||||||||||||| || ||||||||||||| |||||||||||    
T  50344859 attttggtattatggattaattttaattaaaattggatgtaac 50344901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 7743616 - 7743669
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgttt 231  Q
    ||||||||||||||||||||||||  |||| ||| || ||||||||||| ||||    
T  7743616 gcactccttgtgctgaaatctccatgctttcagttttttaatccattttagttt 7743669  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 39059779 - 39059723
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    ||||| ||||||||||| ||| |||||||| |||| | ||||||||||| |||||||    
T  39059779 gcactgcttgtgctgaattcttcagactttcagtaatttaatccattttagtttctt 39059723  T

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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 14255367 - 14255435
Alignment:
Q  30 tcttgtcctatcaaaa-atatactgtctaacttgcgtgatctctcctcaaaggaaaaatgtaaaattta 97  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  14255367 tcttgttctatcaaaaaatatactgtctaacttgcgtgatctctcctcaaatgaaaaatggaaaattta 14255435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 4532143 - 4532086
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  4532143 gcactccttgtgctgaaatctccagactttcagtattttaatccattttagtttcttc 4532086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 33766400 - 33766456
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  33766400 gcactccttgtgctgaaatctccagactttcagtattttaatccattttagtttctt 33766456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 34549407 - 34549464
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  34549407 gcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 34549464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 45432430 - 45432373
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  45432430 gcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 45432373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 51534534 - 51534478
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    ||||||||||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  51534534 gcactccttgtgctgaaatctccaggctttcggtattttaatccattttagtttctt 51534478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 19227943 - 19227886
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||| | ||||||    
T  19227943 gcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttcttc 19227886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 33936477 - 33936525
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 226  Q
    ||||||||||| |||||||||||||||||| |||| | |||||||||||    
T  33936477 gcactccttgtcctgaaatctccagactttcagtaatataatccatttt 33936525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 13089818 - 13089765
Alignment:
Q  182 tccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  13089818 tccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 13089765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 45547944 - 45548000
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||| |||||||    
T  45547944 gcactccttgtgctgaaatctccaggctttcagtaatttaatccattttagtttctt 45548000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 4034357 - 4034300
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    |||||||||||||| |||||| ||||||||||||| | |||| |||||| | ||||||    
T  4034357 gcactccttgtgctaaaatcttcagacttttagtaatataattcattttagcttcttc 4034300  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 22639603 - 22639660
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    |||||||||||| ||||||||||| ||||| |||||| ||||||||||| ||||||||    
T  22639603 gcactccttgtgatgaaatctccaaactttcagtattttaatccattttagtttcttc 22639660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 39143276 - 39143220
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    ||||||||| ||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  39143276 gcactccttatgctgaaatctccaggctttcggtattttaatccattttagtttctt 39143220  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 27771336 - 27771387
Alignment:
Q  310 atgataattttggtattatgaataaattttaattaaatttggatgtaacttg 361  Q
    |||| ||||||||||||||   |||||||||| |||||||||||||||||||    
T  27771336 atgacaattttggtattattgttaaattttaaataaatttggatgtaacttg 27771387  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 926769 - 926817
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 226  Q
    |||||||||||||||||||||||| | ||| |||| | |||||||||||    
T  926769 gcactccttgtgctgaaatctccaaattttcagtaatataatccatttt 926817  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 6537120 - 6537176
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    ||||||||| |||||||||||||||| ||| |||| | | ||||||||| |||||||    
T  6537120 gcactccttatgctgaaatctccagagtttcagtaatttcatccattttagtttctt 6537176  T

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Target: scaffold0300 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 9622 - 9678
Alignment:
Q  179 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    |||| ||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||    
T  9622 cacttcttgtgctgaaatcttcaggcttttagtattttaatccattttagtttcttc 9678  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 37648009 - 37648057
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 226  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  37648009 gcactccttgtgctgaaatctccaaactttcagtattttaatccatttt 37648057  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 2702314 - 2702258
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    |||||||||||||||||||||  || |||| |||||| ||||||||||| |||||||    
T  2702314 gcactccttgtgctgaaatcttgaggctttcagtattttaatccattttagtttctt 2702258  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 12410832 - 12410888
Alignment:
Q  179 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||| ||||| |||||||||||| |||| |||||| ||||||||||| ||||||||    
T  12410832 cactctttgtgatgaaatctccaggctttcagtattttaatccattttagtttcttc 12410888  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 12422892 - 12422948
Alignment:
Q  179 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||| ||||| |||||||||||| |||| |||||| ||||||||||| ||||||||    
T  12422892 cactctttgtgatgaaatctccaggctttcagtattttaatccattttagtttcttc 12422948  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 5609207 - 5609266
Alignment:
Q  309 aatgataattttggtattatgaataaattttaattaaatttggatgtaacttgatatttt 368  Q
    ||||| |||||  ||||||| |||||||||||||||| ||||||||||||  ||||||||    
T  5609207 aatgacaatttcagtattattaataaattttaattaactttggatgtaacaagatatttt 5609266  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 27271685 - 27271740
Alignment:
Q  179 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 234  Q
    |||||||||||||||||||||||| |||| |||| | ||||| ||||| |||||||    
T  27271685 cactccttgtgctgaaatctccaggctttcagtaatttaatctattttagtttctt 27271740  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 6764465 - 6764521
Alignment:
Q  179 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    |||||||| |||||||||||||   |||| |||||| ||||||||||| ||||||||    
T  6764465 cactccttatgctgaaatctccgagctttcagtattttaatccattttagtttcttc 6764521  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 94924 - 94981
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 235  Q
    ||||||||||||||||||||||||| |||||| || | ||||||||||| | ||||||    
T  94924 gcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttcttc 94981  T

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Target: scaffold0037 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 1022 - 1069
Alignment:
Q  179 cactccttgtgctgaaatctccagacttttagtattgtaatccatttt 226  Q
    |||||||| ||||||||||||||||||||| ||| | |||||||||||    
T  1022 cactccttatgctgaaatctccagactttttgtaatataatccatttt 1069  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 23838 - 23886
Alignment:
Q  178 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 226  Q
    |||||||||||||||||||||| || ||||||||| | ||||| |||||    
T  23838 gcactccttgtgctgaaatctcaaggcttttagtaatataatcaatttt 23886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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