View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0787_low_31 (Length: 229)

Name: NF0787_low_31
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0787_low_31
NF0787_low_31
[»] chr2 (22 HSPs)
chr2 (11-229)||(387340-387567)
chr2 (9-229)||(10524266-10524491)
chr2 (12-224)||(39338552-39338775)
chr2 (13-91)||(41877244-41877322)
chr2 (9-64)||(14436955-14437010)
chr2 (1-91)||(7874587-7874677)
chr2 (1-89)||(14405512-14405599)
chr2 (1-65)||(5254590-5254653)
chr2 (17-89)||(14106218-14106289)
chr2 (9-68)||(17116576-17116635)
chr2 (9-67)||(3745676-3745734)
chr2 (1-65)||(43248907-43248971)
chr2 (9-65)||(43816135-43816191)
chr2 (12-91)||(22888583-22888662)
chr2 (12-66)||(13512530-13512584)
chr2 (16-67)||(45311499-45311550)
chr2 (17-89)||(7460990-7461061)
chr2 (88-229)||(17116655-17116795)
chr2 (13-47)||(15457817-15457851)
chr2 (10-53)||(7455601-7455644)
chr2 (38-67)||(15457278-15457307)
chr2 (92-120)||(22884931-22884959)
[»] chr3 (26 HSPs)
chr3 (9-229)||(43012541-43012770)
chr3 (9-224)||(47235869-47236091)
chr3 (9-229)||(2392191-2392421)
chr3 (9-229)||(2393954-2394185)
chr3 (9-229)||(45164021-45164246)
chr3 (2-223)||(9583734-9583963)
chr3 (12-229)||(19176670-19176896)
chr3 (9-89)||(30352127-30352207)
chr3 (11-190)||(34475448-34475632)
chr3 (8-194)||(53248102-53248294)
chr3 (1-71)||(21343678-21343748)
chr3 (9-91)||(31483191-31483273)
chr3 (12-97)||(40023260-40023345)
chr3 (9-91)||(50305262-50305344)
chr3 (11-84)||(17551275-17551348)
chr3 (9-68)||(23328036-23328095)
chr3 (10-68)||(45399119-45399177)
chr3 (9-88)||(37158618-37158699)
chr3 (14-67)||(4463778-4463831)
chr3 (21-65)||(25506770-25506814)
chr3 (13-68)||(50559978-50560033)
chr3 (123-224)||(20611954-20612054)
chr3 (1-33)||(47439284-47439316)
chr3 (151-221)||(17551126-17551196)
chr3 (121-229)||(30352248-30352354)
chr3 (92-125)||(32010030-32010063)
[»] chr7 (23 HSPs)
chr7 (9-229)||(31971823-31972049)
chr7 (9-229)||(38306427-38306653)
chr7 (1-229)||(3867282-3867516)
chr7 (9-229)||(47325573-47325800)
chr7 (9-229)||(10244348-10244573)
chr7 (12-223)||(44353255-44353473)
chr7 (13-229)||(5859975-5860203)
chr7 (9-90)||(41089432-41089512)
chr7 (9-229)||(37795155-37795389)
chr7 (9-222)||(3419087-3419304)
chr7 (9-222)||(3419346-3419563)
chr7 (9-90)||(6585198-6585279)
chr7 (8-185)||(25161021-25161202)
chr7 (9-91)||(33434519-33434601)
chr7 (9-91)||(37795635-37795717)
chr7 (18-194)||(40726202-40726384)
chr7 (11-91)||(34391493-34391573)
chr7 (17-91)||(42454430-42454504)
chr7 (1-89)||(48161721-48161808)
chr7 (9-75)||(43482232-43482298)
chr7 (9-67)||(11378809-11378866)
chr7 (88-185)||(35745597-35745693)
chr7 (9-44)||(35745520-35745555)
[»] chr1 (17 HSPs)
chr1 (9-229)||(24449618-24449845)
chr1 (9-185)||(30685612-30685795)
chr1 (9-229)||(5459327-5459553)
chr1 (1-229)||(41920623-41920858)
chr1 (21-229)||(46692519-46692734)
chr1 (9-229)||(5389111-5389336)
chr1 (1-91)||(46814145-46814235)
chr1 (17-91)||(31584735-31584809)
chr1 (21-181)||(24684192-24684358)
chr1 (9-74)||(6804866-6804930)
chr1 (19-91)||(24659241-24659313)
chr1 (8-74)||(7002515-7002581)
chr1 (13-75)||(40216198-40216260)
chr1 (9-67)||(14320658-14320716)
chr1 (13-65)||(27031533-27031585)
chr1 (92-178)||(32882583-32882668)
chr1 (165-229)||(31585610-31585675)
[»] chr8 (26 HSPs)
chr8 (9-229)||(31207050-31207277)
chr8 (9-229)||(24995083-24995310)
chr8 (12-223)||(20138598-20138816)
chr8 (20-181)||(36631038-36631205)
chr8 (13-91)||(12897968-12898046)
chr8 (9-91)||(32065973-32066054)
chr8 (9-91)||(9519817-9519899)
chr8 (9-91)||(27889157-27889239)
chr8 (9-91)||(27947815-27947897)
chr8 (1-74)||(16457155-16457228)
chr8 (16-229)||(37986550-37986773)
chr8 (9-91)||(22773932-22774014)
chr8 (25-229)||(34388711-34388921)
chr8 (9-90)||(15821064-15821145)
chr8 (9-91)||(35815932-35816014)
chr8 (10-91)||(3584048-3584130)
chr8 (14-74)||(35821583-35821643)
chr8 (9-229)||(41893094-41893317)
chr8 (9-63)||(13538324-13538378)
chr8 (9-63)||(13686096-13686150)
chr8 (25-68)||(10837941-10837984)
chr8 (12-57)||(38577477-38577522)
chr8 (165-229)||(12898126-12898190)
chr8 (151-229)||(9519665-9519744)
chr8 (151-224)||(32066132-32066205)
chr8 (90-178)||(10248344-10248431)
[»] chr5 (13 HSPs)
chr5 (9-222)||(18593416-18593635)
chr5 (9-184)||(29087690-29087871)
chr5 (13-229)||(7161706-7161931)
chr5 (9-229)||(34378264-34378492)
chr5 (1-91)||(698678-698768)
chr5 (9-75)||(7452915-7452981)
chr5 (9-90)||(5656781-5656862)
chr5 (9-60)||(18313342-18313393)
chr5 (21-72)||(41250893-41250944)
chr5 (11-63)||(18255140-18255192)
chr5 (90-125)||(7195078-7195113)
chr5 (165-229)||(698527-698591)
chr5 (90-134)||(30097593-30097636)
[»] chr4 (19 HSPs)
chr4 (9-204)||(30964628-30964830)
chr4 (1-229)||(8255193-8255428)
chr4 (1-229)||(8268611-8268846)
chr4 (10-229)||(8705829-8706059)
chr4 (9-194)||(20464791-20464982)
chr4 (9-91)||(27555619-27555701)
chr4 (1-91)||(35329318-35329408)
chr4 (5-67)||(49528421-49528483)
chr4 (10-91)||(36689494-36689575)
chr4 (1-71)||(7703018-7703087)
chr4 (9-67)||(46698467-46698525)
chr4 (9-74)||(4306033-4306097)
chr4 (12-65)||(35341044-35341097)
chr4 (9-65)||(2826118-2826174)
chr4 (13-89)||(11281417-11281493)
chr4 (12-68)||(31050352-31050408)
chr4 (9-222)||(30167251-30167472)
chr4 (1-68)||(52868792-52868859)
chr4 (10-53)||(9750116-9750159)
[»] scaffold0434 (1 HSPs)
scaffold0434 (9-91)||(2361-2443)
[»] chr6 (8 HSPs)
chr6 (13-229)||(10541998-10542220)
chr6 (9-142)||(3254211-3254350)
chr6 (1-75)||(3117821-3117895)
chr6 (88-223)||(14663249-14663384)
chr6 (13-67)||(33697789-33697843)
chr6 (9-117)||(15944274-15944392)
chr6 (1-54)||(15132520-15132573)
chr6 (90-126)||(15120380-15120416)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-89)||(48648-48736)
[»] scaffold0343 (1 HSPs)
scaffold0343 (13-229)||(5872-6094)
[»] scaffold0172 (1 HSPs)
scaffold0172 (11-74)||(19245-19309)
[»] scaffold0068 (1 HSPs)
scaffold0068 (88-142)||(35554-35603)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 387567 - 387340
Alignment:
Q  11 ggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac----------acatcacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||          |||||||||    
T  387567 ggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacttaaaaacacccatgaagataaacccaccaaaacacatcacca 387468  T
Q  101 cctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaaca 200  Q
    ||||||||||||||||||||||||| |||||| ||||||||| | |||| ||||||||||||  ||||| ||||||||||||||| |||||||| ||| |    
T  387467 cctaaaacagactccttcacaaaaa-caagcattgtaaacacaaaattcaccaccgcccatcgtcactattcacccccaaagaacaccctcaaaataaaa 387369  T
Q  201 ctcctacaccccaacacccaagcttagcc 229  Q
    |||| | ||||||||||||||||| ||||    
T  387368 ctcccagaccccaacacccaagctgagcc 387340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 10524491 - 10524266
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||          |||||| ||||    
T  10524491 aaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacacgtcac 10524392  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    |  |||||||| ||||     |||||||||||||| ||||||||   || | ||||||||||||  |||||||||||| |||||||| ||||| || |||    
T  10524391 cgtctaaaacaaactc-----caaaaaacaagcaccgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataa 10524297  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||| | ||||||||||||||||| ||||    
T  10524296 aactcccaaaccccaacacccaagctgagcc 10524266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 39338552 - 39338775
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatca-cca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||          |||||||||| |||    
T  39338552 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctgaaaacacccctgaagataaacccaccaaaacacatcaccca 39338651  T
Q  101 cctaaaacagactc-cttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaac 199  Q
    ||||||||||||||     | |||||||||||||||||||||    || | ||| ||||||||  |||||||||||| |||||||| |||||||| |||     
T  39338652 cctaaaacagactcaaaaaaaaaaaaacaagcactgtaaaca-agtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaa 39338750  T
Q  200 actcctacaccccaacacccaagct 224  Q
    ||||| | ||| |||||||||||||    
T  39338751 actcccagacctcaacacccaagct 39338775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 41877244 - 41877322
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  41877244 tatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacctgaaaacacccctgaagataaac 41877322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 14436955 - 14437010
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14436955 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 14437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7874677 - 7874587
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| || ||  |||||||| ||||||    
T  7874677 caagacacaaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacaccataaccaccaaacaaagcccctgaatataaac 7874587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 14405599 - 14405512
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataa 89  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| |||||||    
T  14405599 caagacgtaaggtatgaacgaa-caagatacaaatggtgctgcatatagacggtacaccataaccacctaacaaagcccctaaagataa 14405512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5254653 - 5254590
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 65  Q
    |||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  5254653 caagacgtaaggtatggacgaaata-gatacaaatggtgccgcatatagacggtacaccataacc 5254590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 14106218 - 14106289
Alignment:
Q  17 gacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataa 89  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||    
T  14106218 gacgaaacaagatagaaatggtgccgcatatagacggtacaccataaccacc-aaacaagcccctgaagataa 14106289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 17116576 - 17116635
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 68  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  17116576 aaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataaccacc 17116635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 3745734 - 3745676
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 67  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  3745734 aaggtatggacgaaacaagatacaaatggtgctgcatatagatggtacatcataaccac 3745676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43248907 - 43248971
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 65  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||    
T  43248907 caagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacggtatatcataacc 43248971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 43816135 - 43816191
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 65  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  43816135 aaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacaccataacc 43816191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 22888583 - 22888662
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||| |||||||| || |||||||||| ||||||||||||| | |||||||| |||| ||| |||||||||||||||    
T  22888583 gtatggatgaaacaaggtagaaatggtgccacatatagacggtatatcataaccaactaagaacacccctgaagataaac 22888662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 13512530 - 13512584
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacca 66  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  13512530 gtatggacgaaacaaaatacaaatgatgccgcatatagacggtacaacataacca 13512584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 45311499 - 45311550
Alignment:
Q  16 ggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 67  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  45311499 ggacgaaacaagatacaaatggtgccacatatatacggaacaccataaccac 45311550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 7461061 - 7460990
Alignment:
Q  17 gacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataa 89  Q
    |||||||||| ||||||||||||  |||||||||| |||||||||||||||| ||| |  |||||||||||||    
T  7461061 gacgaaacaaaatacaaatggtgttgcatatagacagtacaccataaccacc-aaacaagcccctgaagataa 7460990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 17116655 - 17116795
Alignment:
Q  88 aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccc 187  Q
    |||||||||||| |||||||||||||     | |||||| |||||||||||||||   || | ||||||||||||  || ||||||||| |||||||| |    
T  17116655 aaacacatcaccgcctaaaacagactaaa--aaaaaaaaaaagcactgtaaacacggtatccaccaccgcccatcgtcattactcacccacaaagaacac 17116752  T
Q  188 cctcaaact-aacactcctacaccccaacacccaagcttagcc 229  Q
    ||||||| | || ||||  | ||||||||||||||||| ||||    
T  17116753 cctcaaaataaaaactctcagaccccaacacccaagctgagcc 17116795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 15457851 - 15457817
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatat 47  Q
    |||||||||||||||||||||||||||||||||||    
T  15457851 tatggacgaaacaagatacaaatggtgccgcatat 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 7455644 - 7455601
Alignment:
Q  10 aggtatggacgaaacaagatacaaatggtgccgcatatagacgg 53  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||    
T  7455644 aggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 15457307 - 15457278
Alignment:
Q  38 tgccgcatatagacggtacaccataaccac 67  Q
    ||||||||||||||||||||||||||||||    
T  15457307 tgccgcatatagacggtacaccataaccac 15457278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 22884931 - 22884959
Alignment:
Q  92 acatcaccacctaaaacagactccttcac 120  Q
    |||||||||||||||||||||||||||||    
T  22884931 acatcaccacctaaaacagactccttcac 22884959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 43012770 - 43012541
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac----------acatcac 98  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||          |||||||    
T  43012770 aaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacctaaaaacactcctgaagaaaaacccaccaaaagacatcac 43012671  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    || |||||||||||||||||||||||| |||||| |||||||||   || | || ||| ||||| |||||||||||| ||||||||| |||||||| |||    
T  43012670 catctaaaacagactccttcacaaaaa-caagcattgtaaacacggtatccacccccgtccatcgccactactcacctccaaagaacaccctcaaattaa 43012572  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||||| ||||||||||||||||| ||||    
T  43012571 aactcctagaccccaacacccaagctgagcc 43012541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 47236091 - 47235869
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac----------acatcac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||||||          |||||||    
T  47236091 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataaccatctaaaaacacccctggagataaacccaccaaaatacatcac 47235992  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    |||||||||||||   ||| | ||||||||||||||||||||||   || | |||||| |||||  |||||||||||| |||||||| |||||||| |||    
T  47235991 cacctaaaacaga---cttaaaaaaaaacaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataa 47235895  T
Q  199 cactcctacaccccaacacccaagct 224  Q
     ||||  | |||||||||||||||||    
T  47235894 aactcgcagaccccaacacccaagct 47235869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 2392191 - 2392421
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||          |||||||||||    
T  2392191 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctgaaaataaacccaccaaaacacatcac 2392290  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    | ||||||| |||||     | |||||| |||||||||||||||   || | ||||||||||||  |||||||||||| |||| ||| ||  |||| |||    
T  2392291 cgcctaaaatagactaaaaaaaaaaaaaaaagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacctacaaaataa 2392390  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||||| ||||||||||||||||| ||||    
T  2392391 aactcctagaccccaacacccaagctgagcc 2392421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 2393954 - 2394185
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||          |||||||||||    
T  2393954 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctgaaaataaacccaccaaaacacatcac 2394053  T
Q  99 cacctaaaacagact-ccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaacta 197  Q
    | ||||||| |||||      | |||||| |||||||||||||||   || | ||||||||||||  |||||||||||| |||| ||| ||  |||| ||    
T  2394054 cgcctaaaatagactaaaaaaaaaaaaaaaaagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacctacaaaata 2394153  T
Q  198 acactcctacaccccaacacccaagcttagcc 229  Q
    | ||||||| ||||||||||||||||| ||||    
T  2394154 aaactcctagaccccaacacccaagctgagcc 2394185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 45164246 - 45164021
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||          |||||||||||    
T  45164246 aaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac-accctggagataaacccaccaaaacacatcac 45164148  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||| |||||||     || ||||||||| |||||||||   ||||  |||||||||||  ||||| |||||  |||| ||| |||||||| |||    
T  45164147 cacctaaaatagactcc----aaagaaacaagcattgtaaacacggtattcatcaccgcccatcgtcactaatcacctacaaataacaccctcaaaataa 45164052  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||||| ||||||||||||||||| ||||    
T  45164051 aactcctagaccccaacacccaagctaagcc 45164021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 9583734 - 9583963
Alignment:
Q  2 aagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaac 91  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||| ||          ||||    
T  9583734 aagacacaaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaatacccttgaaaataaacccaccaaaac 9583833  T
Q  92 acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctc 191  Q
    ||||||||||  |||  ||||||||||| ||||||||||||| |||||||| | || | |||||||| |||  ||||||||| || ||||||||  ||||    
T  9583834 acatcaccacaaaaattagactccttca-aaaaaacaagcaccgtaaacacgatatccaccaccgcctatcgtcactactca-ccgcaaagaacatcctc 9583931  T
Q  192 aaactaacactcctacaccccaacacccaagc 223  Q
    ||| ||| ||||| | ||||||| ||||||||    
T  9583932 aaaataaaactcccagaccccaaaacccaagc 9583963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 19176896 - 19176670
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaaga----------taaacacatcaccac 101  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||           |||||||| |||||    
T  19176896 gtatggacgaaacatgatacaaatggtgccgcatatagacggtacaccataacgacctaaaaatacccctgaagacaaacccaccaaaacacataaccac 19176797  T
Q  102 ctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacac 201  Q
    ||||||||||||||   | ||||||||||||| ||||||||   || | |||||  |||||  ||||||||||||| ||||||| |||||||| ||| ||    
T  19176796 ctaaaacagactcc-aaaaaaaaaacaagcacagtaaacacagtatccaccaccatccatcgtcactactcacccctaaagaacaccctcaaaataaaac 19176698  T
Q  202 tcctacaccccaacacccaagcttagcc 229  Q
     || | ||||| ||||||||||| ||||    
T  19176697 acccagaccccgacacccaagctgagcc 19176670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 30352127 - 30352207
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataa 89  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  30352127 aaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacctaaaaacacccctgaagataa 30352207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 34475448 - 34475632
Alignment:
Q  11 ggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcacca 100  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||| ||||          |||||||||||||    
T  34475448 ggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataaccacctaagaacacccctggagataaactcaccaaaacacatcacca 34475547  T
Q  101 cctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccct 190  Q
    ||||||||||||||     ||||||||||||| |||||||||   || | ||||||||||||  |||||||||||| |||||||| ||||    
T  34475548 cctaaaacagactc-----caaaaaacaagcaatgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccct 34475632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 53248294 - 53248102
Alignment:
Q  8 taaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatca 97  Q
    |||||||||||| ||||||||||||||||||| |||||||||   |||||||||||||| ||||||||  ||||||||||          ||||||||||    
T  53248294 taaggtatggacaaaacaagatacaaatggtgtcgcatataggttgtacaccataaccatctaaaaacaaccctgaagataaccccacaaaaacacatca 53248195  T
Q  98 ccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaa 194  Q
    ||||||||||||||||||     ||||||||||||||||||||||   |  | ||||||||||||  |||||||||||| |||||||| | ||||||    
T  53248194 ccacctaaaacagactcc----aaaaaaacaagcactgtaaacacggtaaccaccaccgcccatcgtcactactcacccacaaagaacactctcaaa 53248102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 21343748 - 21343678
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaa 71  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21343748 caagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacctaa 21343678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 31483273 - 31483191
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  31483273 aaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaacacccctggagataaac 31483191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 40023260 - 40023345
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaacacatca 97  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||  ||||||||||||||| |||||    
T  40023260 gtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccaccaaacaaagcccctgaagataaacccatca 40023345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 50305262 - 50305344
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | || ||  |||||||||||||||    
T  50305262 aaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacaccataaccatcaaataaagcccctgaagataaac 50305344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 17551348 - 17551275
Alignment:
Q  11 ggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaa 84  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  17551348 ggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacctctgaa 17551275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 23328036 - 23328095
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 68  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  23328036 aaggtatggacgaaacaagatataaatggtgccgcatatatacggtacaccataaccacc 23328095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 45399177 - 45399119
Alignment:
Q  10 aggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 68  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45399177 aggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacc 45399119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 37158699 - 37158618
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatat-agacggt-acaccataaccacctaaaaactcccctgaagata 88  Q
    ||||||||||||||||| ||||||||||||||||||||| | | ||| |||| |||||||||||||||| ||||||||||||    
T  37158699 aaggtatggacgaaacaggatacaaatggtgccgcatataatatggtaacactataaccacctaaaaacacccctgaagata 37158618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 4463778 - 4463831
Alignment:
Q  14 atggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 67  Q
    ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  4463778 atggacgaaacaacacacaaatggtgccgcatatagacggtgcaccataaccac 4463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 25506770 - 25506814
Alignment:
Q  21 aaacaagatacaaatggtgccgcatatagacggtacaccataacc 65  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  25506770 aaacaatatacaaatggtgccgcatatagacggtacaccataacc 25506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 50560033 - 50559978
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 68  Q
    |||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||    
T  50560033 tatggacgaaacaagatacaaaagatgccgcacatagacggtgcaccataaccacc 50559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 20612054 - 20611954
Alignment:
Q  123 aaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacactcctacaccccaacacccaag 222  Q
    ||||||||||||||||||||   || | ||| ||||||||  |||||||||||| |||||||| |||||| | ||| ||||||| | |||||||||||||    
T  20612054 aaaacaagcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcagaataaaactcctaga-cccaacacccaag 20611956  T
Q  223 ct 224  Q
    ||    
T  20611955 ct 20611954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47439316 - 47439284
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  47439316 caagacataaggtatggacgaaacaagatacaa 47439284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 17551196 - 17551126
Alignment:
Q  151 ccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacactcctacaccccaacacccaa 221  Q
    ||||||||||||  |||||||||||  |||||||| |||||||| ||| ||||  | ||||||||||||||    
T  17551196 ccaccgcccatcgtcactactcaccgacaaagaacaccctcaaaataaaactctcagaccccaacacccaa 17551126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 30352248 - 30352354
Alignment:
Q  121 aaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacactcctacaccccaacaccca 220  Q
    |||||||||| |||||||||||   || | ||||| ||||||  ||||||||| || |||||||| |||| |||  || ||||| | |||||||||||||    
T  30352248 aaaaaacaagtactgtaaacacggtatccaccaccacccatcgtcactactcatccacaaagaacaccctaaaa--aaaactccgagaccccaacaccca 30352345  T
Q  221 agcttagcc 229  Q
    |||| ||||    
T  30352346 agctgagcc 30352354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 32010063 - 32010030
Alignment:
Q  92 acatcaccacctaaaacagactccttcacaaaaa 125  Q
    ||||||||||||||||||||||||||||| ||||    
T  32010063 acatcaccacctaaaacagactccttcacgaaaa 32010030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 31971823 - 31972049
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||          |||||||| ||    
T  31971823 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacacataac 31971922  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||| |||||     ||||||||||||||||||||||   ||   ||||||||||||  |||||||||||| |||||||| ||||| || |||    
T  31971923 cacctaaaacaaactcc----aaaaaaacaagcactgtaaacacggtatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataa 31972018  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||| | ||||||||||||||||| ||||    
T  31972019 aactcccagaccccaacacccaagctgagcc 31972049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 38306653 - 38306427
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||          |||||||||||    
T  38306653 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctaaagataaaccaaccaaaacacatcac 38306554  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||| |||||    ||||||||||| |||| | |||| | || | ||||| ||||||  |||||||||||  |||||||| |||||||| |||    
T  38306553 cacctaaaacaaactcc----caaaaaacaagaactgcagacacgatatccaccaccacccatcgtcactactcacctacaaagaacaccctcaaaataa 38306458  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||  | ||||||||||||||||| ||||    
T  38306457 aactcacagaccccaacacccaagctgagcc 38306427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3867516 - 3867282
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaa 90  Q
    |||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||          |||    
T  3867516 caagacgtaaggtattgacgaaacaagatacaaatggtgccacatatagacggtacaccataacaacataaaaacacccctgaagataaactcaccaaaa 3867417  T
Q  91 cacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccct 190  Q
    |||||||||||| |||||| |||||||||| |||||||   ||||||||||| | || | |||||| |||||  ||||||||||||||||||||| ||||    
T  3867416 cacatcaccacccaaaacaaactccttcac-aaaaaca---actgtaaacacgatatccaccaccgtccatcgtcactactcacccccaaagaacaccct 3867321  T
Q  191 caaactaacactcctacaccccaacacccaagcttagcc 229  Q
    |||| ||| ||| | | || |||||||||||||| ||||    
T  3867320 caaaataaaacttccatactccaacacccaagctgagcc 3867282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 47325573 - 47325800
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||          |||||||||||    
T  47325573 aaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaac-actctgaagataaacccaccaaaacacatcac 47325671  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||| |||  |  | ||||||||||||||||||||||   || |  || ||||||||  |||||||||||| |||||||| |||||||| |||    
T  47325672 cacctaaaacaaact--tcaaaaaaaaacaagcactgtaaacacagtatccatcatcgcccatcgtcactactcacccacaaagaacaccctcaaaataa 47325769  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||| | ||||||||||||||||| ||||    
T  47325770 aactcccagaccccaacacccaagctgagcc 47325800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 10244573 - 10244348
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||          |||||||||||    
T  10244573 aaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataaccacctaaaaacacccctgaagataagtccacgaaaacacatcac 10244474  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||| ||||     ||||||| |||||| |||||||    || | ||| ||||||||  |||||||||||| |||||| | ||||| ||||||    
T  10244473 cacctaaaacaaactc-----caaaaaataagcaccgtaaacatggtatccaccatcgcccatcgtcactactcacccacaaagaccaccctccaactaa 10244379  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     | ||| | |||| |||||||||||| ||||    
T  10244378 aaatcccagacccaaacacccaagctgagcc 10244348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 44353255 - 44353473
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcaccac 101  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||          ||||||||||||||    
T  44353255 gtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacctaaaaacacccatggagataaacccaccaaaacacatcaccac 44353354  T
Q  102 ctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctc-aaactaaca 200  Q
    ||||||||||||||     ||||| ||||||||||||||||   || | |||||| |||||  |||||||||||  |||||||| ||||| ||| ||| |    
T  44353355 ctaaaacagactcc----aaaaaatcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaa 44353450  T
Q  201 ctcctacaccccaacacccaagc 223  Q
    |||| | ||||||||||||||||    
T  44353451 ctcccagaccccaacacccaagc 44353473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 5859975 - 5860203
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcaccacc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||          |||||||||||||||    
T  5859975 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctaaagataatcccaccaaaacacatcaccacc 5860074  T
Q  103 taaaacagact--ccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaaca 200  Q
    |||||||||||       | |||||||||||||| | |||||   |||| |||  |||||||  ||||||||| || |||||||| |||| ||| ||| |    
T  5860075 taaaacagactaaaaaaaaaaaaaaacaagcactattaacacggtattcaccattgcccatcgtcactactcatccacaaagaacaccctgaaaataaaa 5860174  T
Q  201 ctcctacaccccaacacccaagcttagcc 229  Q
    |||| | ||||||||||||||||| ||||    
T  5860175 ctcccagaccccaacacccaagctgagcc 5860203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 41089432 - 41089512
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaa 90  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  41089432 aaggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaa 41089512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 37795389 - 37795155
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    ||||||||||||||||||||||||||||||| |||   || |||||||||||||||||||||||||| ||| |||||||          ||||| |||||    
T  37795389 aaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaaaaacacccatgaagataaacccacaaaaacatatcac 37795290  T
Q  99 cacctaaaacagactcc----ttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaa 194  Q
    |||||||||||||||||       | |||||| |||||||||||||||   || | |||||||||||||  |||||| | || |||||||| ||||||||    
T  37795289 cacctaaaacagactccaaaaaaaaaaaaaaaaaagcactgtaaacacggtatccaccaccgcccatcattactacttaaccacaaagaacaccctcaaa 37795190  T
Q  195 ctaacactcctacaccccaacacccaagcttagcc 229  Q
     ||| ||||  | ||||||||||||||||| ||||    
T  37795189 ataaaactctcaaaccccaacacccaagctgagcc 37795155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 3419087 - 3419304
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||||||||||||||| | |||||||||  ||||||||||||||||||||||||||| | |||||||||          ||||||| |||    
T  3419087 aaggtatggacgaaacaagatacaaacgttgccgcata--gacggtacaccataaccacctaaaaacactcctgaagataaactcaccaaaacacaacac 3419184  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||||| |||     |||||||||||| ||||||||  | || | ||||||  ||||| |||||||||| | |||| ||| |||| ||| |||    
T  3419185 cacctaaaacagaatcc----aaaaaaacaagcattgtaaacatgatatccaccaccgttcatcatcactactcactcacaaaaaacacccttaaaataa 3419280  T
Q  199 cactcctacaccccaacacccaag 222  Q
     ||||| | |||||||||||||||    
T  3419281 aactcccaaaccccaacacccaag 3419304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 3419346 - 3419563
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||||||||||||||| | |||||||||  ||||||||||||||||||||||||||| | |||||||||          ||||||| |||    
T  3419346 aaggtatggacgaaacaagatacaaacgttgccgcata--gacggtacaccataaccacctaaaaacactcctgaagataaactcaccaaaacacaacac 3419443  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||||| |||     ||||||||| || ||||||||  | || | ||||||  ||||  |||||||||| | |||||||| |||| ||| |||    
T  3419444 cacctaaaacagaatcc----aaaaaaacaancattgtaaacatgatatccaccaccgttcatcgtcactactcactcacaaagaacacccttaaaataa 3419539  T
Q  199 cactcctacaccccaacacccaag 222  Q
     ||||| | |||||||||||||||    
T  3419540 aactcccaaaccccaacacccaag 3419563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 6585279 - 6585198
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaa 90  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||  ||||||||||||||    
T  6585279 aaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccaccaaacaaaacccctgaagataaa 6585198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 25161202 - 25161021
Alignment:
Q  8 taaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatca 97  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||  ||||| ||||          ||||||||||    
T  25161202 taaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacctaaaaac-accctggagataaacccaccaaaacacatca 25161104  T
Q  98 ccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaac 185  Q
    ||||||||||||||||      ||||||||||||| ||||||||    || | ||| ||||||||  |||||||||||| ||||||||    
T  25161103 ccacctaaaacagact-----tcaaaaaacaagcaatgtaaacatagtatccaccaacgcccatcgtcactactcacccacaaagaac 25161021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 33434519 - 33434601
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||| |||||| | ||||||    
T  33434519 aaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacctaaaaacacccctggaaataaac 33434601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 37795717 - 37795635
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||||||||||||||||||||||||||| |||   || |||||||||||||||||||||||||| ||| |||||||||||    
T  37795717 aaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaaaaacacccatgaagataaac 37795635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 40726202 - 40726384
Alignment:
Q  18 acgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcaccacctaaaa 107  Q
    ||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||||| |||||| ||||          |||||||| |||||||||||    
T  40726202 acgaaacaaaatacaaatgatgctacatatagacggtacaccataaccacctaaaaacacccctggagataaacccaccaaaacacattaccacctaaaa 40726301  T
Q  108 cagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaa 194  Q
    |||||||   || ||||| ||||||| ||||||||   || | |||||||| |||| ||||||||| || |||||||| ||||||||    
T  40726302 cagactc---caaaaaaatcaagcacggtaaacacggtatccaccaccgcctatcatcactactca-ccacaaagaacaccctcaaa 40726384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 34391573 - 34391493
Alignment:
Q  11 ggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| || ||  |||||||||||||||    
T  34391573 ggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataaccaccaaacaaagcccctgaagataaac 34391493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 42454430 - 42454504
Alignment:
Q  17 gacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||   || |||||||||||    
T  42454430 gacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacctaaaaaaatccttgaagataaac 42454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 48161721 - 48161808
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataa 89  Q
    ||||||| ||| |||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||| ||  |||||||||||||    
T  48161721 caagacacaagatatggacgaa-caaaatacaaatagtgccgcatatagacggcacaccataaccacctaacaaagcccctgaagataa 48161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 43482298 - 43482232
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 75  Q
    ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||||||||    
T  43482298 aaggtatggacgaaataagatacaaatagtgctgcatacagacggtacaccacaaccacctaaaaac 43482232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 11378809 - 11378866
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 67  Q
    ||||||||||||||  |||||||| ||| ||||||||||| ||||||||||||||||||    
T  11378809 aaggtatggacgaat-aagatacagatgatgccgcatataaacggtacaccataaccac 11378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 35745597 - 35745693
Alignment:
Q  88 aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaac 185  Q
    |||||||||||||||||| |||||| |||| || | |||||| |||  ||||||| |||| | || || ||||||  |||||||||||||||||||||    
T  35745597 aaacacatcaccacctaagacagacaccttaac-agaaacaaacacactaaacacaacatccacccccacccatcgtcactactcacccccaaagaac 35745693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 35745520 - 35745555
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgca 44  Q
    ||||||||||||||||||||||||||||||| ||||    
T  35745520 aaggtatggacgaaacaagatacaaatggtgtcgca 35745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 24449618 - 24449845
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||          |||||||||||    
T  24449618 aaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacataaaaacacccctagagataaacacaccaaaacacatcac 24449717  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||  ||||||   || ||||||||||||||||||||||   || | ||||||||||||  |||||||||||| |||| ||| |||||||| |||    
T  24449718 cacctaaagtagactc---caaaaaaaacaagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacaccctcaaaataa 24449814  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||||| ||||||||||||||||| ||||    
T  24449815 aactcctagaccccaacacccaagctgagcc 24449845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 30685612 - 30685795
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||          |||||||||||    
T  30685612 aaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacacatcac 30685711  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaac 185  Q
    ||||||||||||||||   ||  ||||||||||| |||||||||   || | ||||||||||||  |||||| ||||| ||||||||    
T  30685712 cacctaaaacagactc---caacaaaaacaagcaatgtaaacacggtatccaccaccgcccatcttcactacacacccacaaagaac 30685795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 5459553 - 5459327
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||          |||||||||||    
T  5459553 aaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacctaaaaatacccctgaagataaactcaccaaaacacatcac 5459454  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
     || ||||||| |||||     ||||||||| ||||||||||||   || | ||||||||||||  |||||||||||| |||||||| || ||||| |||    
T  5459453 tacttaaaacaaactcc----aaaaaaacaatcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccatcaaaataa 5459358  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||| | | ||||||||||||||||| ||||    
T  5459357 aacttccagaccccaacacccaagctgagcc 5459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 41920858 - 41920623
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac--------- 91  Q
    |||||| |||||||||||||||| || |||||||| |||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||             
T  41920858 caagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacaccgtaaccacctaaaaacacccgtgaagataaaccaaccaaaa 41920759  T
Q  92 -acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccct 190  Q
     ||| |||||||||||||| ||||    | |||||||||||| |||||||||   |||| |||||||| |||  |||||||||||| |||| ||| ||||    
T  41920758 tacaccaccacctaaaacaaactc---aaaaaaaaacaagcaatgtaaacacggtattcaccaccgcctatcgtcactactcacccacaaaaaacaccct 41920662  T
Q  191 caaactaacactcctacaccccaacacccaagcttagcc 229  Q
    |||| ||| ||||| | ||||||||||||||||| ||||    
T  41920661 caaaataaaactccaagaccccaacacccaagctgagcc 41920623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 46692519 - 46692734
Alignment:
Q  21 aaacaagatacaaatggtgccgcatatagacggtacaccataaccacct-aaaaactcccctgaagat----------aaacacatcaccacctaaaaca 109  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||          ||||||||||||||||||||||    
T  46692519 aaacaagataaaaatggtgccgcataaagacggtacaccataaccacctaaaaaacacccctgaagataaaccctccaaaacacatcaccacctaaaaca 46692618  T
Q  110 gactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacactcctacac 209  Q
     |||||     |||||||||||||||||||||| | ||   ||||||||||||  |||||||||||| |||||||| ||||| || ||| ||| | | ||    
T  46692619 aactcc----aaaaaaacaagcactgtaaacacgatatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaacttccagac 46692714  T
Q  210 cccaacacccaagcttagcc 229  Q
    ||||||||||||||| ||||    
T  46692715 cccaacacccaagctgagcc 46692734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 5389111 - 5389336
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||  ||||          |||||||||||    
T  5389111 aaggtatggacgaaataagatacaaatggtgccgcatatagacggcacactataaccacctaaaaacacccctagagataaaccaaccaaaacacatcac 5389210  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||| |||||    |||||||||||||| ||||||||   || | ||||||||||||  ||||||||||   | |||||| |||||||| |||    
T  5389211 cacctaaaacaaactcc----caaaaaacaagcaccgtaaacacggtatccaccaccgcccatcgtcactactcacttac-aagaacaccctcaaaataa 5389305  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||| | ||||||||||||||||| ||||    
T  5389306 aactcccagaccccaacacccaagctgagcc 5389336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 46814145 - 46814235
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||    
T  46814145 caagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaagcccctgaagataaac 46814235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 31584735 - 31584809
Alignment:
Q  17 gacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31584735 gacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaacacccctgaagataaac 31584809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 24684192 - 24684358
Alignment:
Q  21 aaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcaccacctaaaacag 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||          ||||||||||||||||||||||     
T  24684192 aaacaagatacaaatggtgccacatatagacggtacaccataatcacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaa 24684291  T
Q  111 actccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaa 181  Q
    |||||     ||||||||| | |||||||||| | || | ||||||||||||  ||||||||| |||||||    
T  24684292 actcc----aaaaaaacaaactctgtaaacacgatatccaccaccgcccatcgtcactactcaaccccaaa 24684358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 6804930 - 6804866
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 74  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6804930 aaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 6804866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 24659313 - 24659241
Alignment:
Q  19 cgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||    
T  24659313 cgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaagcccctgaagataaac 24659241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 7002581 - 7002515
Alignment:
Q  8 taaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 74  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  7002581 taaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataaccacttaaaaa 7002515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 40216198 - 40216260
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 75  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40216198 tatggacgaatcaagatacaaatggtgccgcatatagacggtacatcataaccacctaaaaac 40216260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 14320716 - 14320658
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 67  Q
    ||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||||    
T  14320716 aaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataaccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 27031533 - 27031585
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 65  Q
    |||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||    
T  27031533 tatggacggaacaatatataaatggtgccgcatatatacggtacaccataacc 27031585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 32882668 - 32882583
Alignment:
Q  92 acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcaccccc 178  Q
    |||||||| |||||||| |||||||||||  ||||| |||||||||||||| | || |  |||| ||||||  ||||||||||||||    
T  32882668 acatcaccgcctaaaactgactccttcac-gaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcaccccc 32882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31585610 - 31585675
Alignment:
Q  165 cactactcacccccaaagaaccccctcaaactaacactcctaca-ccccaacacccaagcttagcc 229  Q
    |||||||||||| |||||||| |||||||| ||| ||||  | | |||||||||||||||||||||    
T  31585610 cactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagcttagcc 31585675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 31207050 - 31207277
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||          |||||||||||    
T  31207050 aaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacctaaaaacactcctgaagataaactcaccaaaacacatcac 31207149  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||||||||    | |||||| |||||||||||||||   || | ||| ||||||||  |||||||||||| |||||||| |||||||| |||    
T  31207150 cacctaaaacagactc---aaaaaaaaaaaagcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataa 31207246  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||| | || |||||||||||||| ||||    
T  31207247 aactcccatactccaacacccaagctgagcc 31207277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 24995083 - 24995310
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaacaca----------tcac 98  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| ||          ||||    
T  24995083 aaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacatgtcac 24995182  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    |||||||||||  ||||     |||||||||||| |||||||||   || | ||||||||||||  |||||||||| | |||||||| |||||||| |||    
T  24995183 cacctaaaacaatctcc----aaaaaaacaagcattgtaaacacggtatccaccaccgcccatcgtcactactcacgcacaaagaacaccctcaaaataa 24995278  T
Q  199 cactcctaca-ccccaacacccaagcttagcc 229  Q
     ||||||| | |||||||||||||||| ||||    
T  24995279 aactcctagacccccaacacccaagctgagcc 24995310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 20138816 - 20138598
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcaccac 101  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||          ||||||||||||||    
T  20138816 gtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacctaaaaacacccatggagataaacccaccaaaacacatcaccac 20138717  T
Q  102 ctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctc-aaactaaca 200  Q
    ||||||||||||||     ||||| ||||||||||||||||   || | |||||| |||||  |||||||||||  |||||||| ||||| ||| ||| |    
T  20138716 ctaaaacagactcc----aaaaaatcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaa 20138621  T
Q  201 ctcctacaccccaacacccaagc 223  Q
    |||| | ||||||||||||||||    
T  20138620 ctcccagaccccaacacccaagc 20138598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 36631205 - 36631038
Alignment:
Q  20 gaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcaccacctaaaaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||          ||||||||||||||||||||||    
T  36631205 gaaacaagatacaaatggtgccgcatatagacggtacaccataatcacctaaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaaca 36631106  T
Q  110 gactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaa 181  Q
    ||||||     ||||||||| ||||||||||||   || | ||||||||||||   ||||||||||||||||    
T  36631105 gactcc----aaaaaaacaaacactgtaaacacggtatccaccaccgcccatcgtaactactcacccccaaa 36631038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 12897968 - 12898046
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  12897968 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacctaaaaacacccctgaagataaac 12898046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 32065973 - 32066054
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  32065973 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca-cataaccacctaaaaacacccctgaagataaac 32066054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 9519899 - 9519817
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||||    
T  9519899 aaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataaccacctaaaaacacccctgatgataaac 9519817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 27889239 - 27889157
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  27889239 aaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaac 27889157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 27947897 - 27947815
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  27947897 aaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaac 27947815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16457155 - 16457228
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 74  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16457155 caagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacctaaaaa 16457228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 37986550 - 37986773
Alignment:
Q  16 ggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcaccacctaa 105  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||          ||||||||||||||||||    
T  37986550 ggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaacacccctaaagataaacccattaaaacacatcaccacctaa 37986649  T
Q  106 aacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacactcct 205  Q
    |||| |||     | |||||||||||| |||||||||   ||   ||||| ||||||  || ||||||||| |||||||| ||||| || ||| |||||     
T  37986650 aacaaactaaaaaaaaaaaaacaagcattgtaaacacggtatctaccaccacccatcgtcattactcacccacaaagaacaccctccaaataaaactccc 37986749  T
Q  206 acaccccaacacccaagcttagcc 229  Q
    | |||  |||||||||||| ||||    
T  37986750 agaccgaaacacccaagctgagcc 37986773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 22774014 - 22773932
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||  |||||||||||    
T  22774014 aaggtatggacgaaactagatacaaatggtgccgcatatagacggtacaccataaccatctaaaaacaccagtgaagataaac 22773932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 34388711 - 34388921
Alignment:
Q  25 aagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcaccacctaaaacagactc 114  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||          |||||||||||||||||||||| ||||    
T  34388711 aagatacaaatagtgctgcatatagacggtacaccataaccacctaaaaacacccgtgaagataaacccagcaaaacacatcaccacctaaaacaaactc 34388810  T
Q  115 cttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacactcctacaccccaa 214  Q
       || |||||  ||||| |||||||| |  || | |||||||| |||  |||||||||||| |||||||| |||||||| ||| ||||  | |||||||    
T  34388811 ---caaaaaaagaaagcaatgtaaaca-cgtatccaccaccgcctatcgtcactactcacccacaaagaacaccctcaaaataaaactctcataccccaa 34388906  T
Q  215 cacccaagcttagcc 229  Q
    |||||||||| ||||    
T  34388907 cacccaagctgagcc 34388921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 15821064 - 15821145
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaa 90  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || ||  ||||||||||||||    
T  15821064 aaggtatggacggaacaagatacaaatggtgccgcatatagacggtataccataaccaccaaataaaacccctgaagataaa 15821145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 35815932 - 35816014
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||  ||| |||||||||||    
T  35815932 aaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacccccaaacaaagcccatgaagataaac 35816014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 3584130 - 3584048
Alignment:
Q  10 aggtatggacgaaacaa-gatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||  ||||| |||||||||    
T  3584130 aggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaagccccttaagataaac 3584048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 35821643 - 35821583
Alignment:
Q  14 atggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 74  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  35821643 atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataaccacttaaaaa 35821583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 41893094 - 41893317
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||||||||||   ||| || |||          |||||||||||    
T  41893094 aaggtatgaacgaaaaaa-atacaaatggtgtcgcatatagacggtacaccataaccacctaaaaaaaaccc-gaggataaatccaccaaaacacatcac 41893191  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
     ||||||||||||||     | |||||||||| |||||||||||   || | |||||| |||||  |||||||||||| |||||||| |||| ||| ||     
T  41893192 tacctaaaacagact-----aaaaaaaacaagaactgtaaacacggtatccaccaccgaccatcgtcactactcacccacaaagaacaccctgaaaatag 41893286  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||| | ||| ||||||||||||| ||||    
T  41893287 aactcccagacctcaacacccaagctgagcc 41893317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 13538378 - 13538324
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 63  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||    
T  13538378 aaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13538324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 13686096 - 13686150
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 63  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||    
T  13686096 aaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 10837941 - 10837984
Alignment:
Q  25 aagatacaaatggtgccgcatatagacggtacaccataaccacc 68  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10837941 aagatgcaaatcgtgccgcatatagacggtacaccataaccacc 10837984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 38577477 - 38577522
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtaca 57  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  38577477 gtatgaacgaaacaatatacaaatgatgccgcatatagacggtaca 38577522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 12898126 - 12898190
Alignment:
Q  165 cactactcacccccaaagaaccccctcaaactaacactcctacaccccaacacccaagcttagcc 229  Q
    |||||||||||| |||||||| |||||||| ||| ||||  | ||||||||||||||||| ||||    
T  12898126 cactactcacccacaaagaacaccctcaaaataaaactctaagaccccaacacccaagctgagcc 12898190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 9519744 - 9519665
Alignment:
Q  151 ccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacactcctaca-ccccaacacccaagcttagcc 229  Q
    ||||||||||||  |||||||||||| |||||||| |||||||| ||| ||||  | | |||||||||||||||| ||||    
T  9519744 ccaccgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagctgagcc 9519665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 32066132 - 32066205
Alignment:
Q  151 ccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacactcctacaccccaacacccaagct 224  Q
    ||||||||||||  |||||||||| | |||||||| ||||| || ||| ||||  | |||||||||||||||||    
T  32066132 ccaccgcccatcgtcactactcactcacaaagaacaccctccaaataaaactctcagaccccaacacccaagct 32066205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 10248344 - 10248431
Alignment:
Q  90 acacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcaccccc 178  Q
    |||| ||||||||||||||| ||||||||||  ||||| | ||||||||| || |||| || || | ||||||  ||||||||||||||    
T  10248344 acacgtcaccacctaaaacaaactccttcac-gaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcaccccc 10248431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 18593635 - 18593416
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||          |||||||||||    
T  18593635 aaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataaccacctaaaaacacccctgaagataaacccgccaaaacacatcac 18593536  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||| ||| |||||     ||||||||||||||||||||||   || | ||||||||||||  |||||||||||| ||||||||  |||| || |||    
T  18593535 cacctaacacaaactcc----aaaaaaacaagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacatcctccaaataa 18593440  T
Q  199 cactcctacaccccaacacccaag 222  Q
     ||||| | |||||||||||||||    
T  18593439 aactcccagaccccaacacccaag 18593416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 29087871 - 29087690
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||          ||||||||||     
T  29087871 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacctaaaaacaaccctgaagataaacccaccaaaacacatcag 29087772  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaa 184  Q
    |||||||||||||||||     ||||||||||||||||||||||   |||| ||||||||||||  ||||||||||||| ||||||    
T  29087771 cacctaaaacagactcc----aaaaaaacaagcactgtaaacacggtattcaccaccgcccatcgtcactactcacccctaaagaa 29087690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 7161706 - 7161931
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac----------acatcaccacc 102  Q
    ||||||||||| ||||||||||| |||  |||||||||||||||||||||| ||||||||||| |||||||| ||||||          ||||||| |||    
T  7161706 tatggacgaaataagatacaaatagtgtagcatatagacggtacaccataatcacctaaaaacacccctgaatataaacccaccaaaacacatcactacc 7161805  T
Q  103 taaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacact 202  Q
    |||||||||||||||||| ||||||||||||||||||||| |  | | ||||| |||| |  ||||||||||||||||||||| || ||||| ||| |||    
T  7161806 taaaacagactccttcac-aaaaacaagcactgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaacaccatcaaaataaaact 7161904  T
Q  203 cctacaccccaacacccaagcttagcc 229  Q
    || | |||||||||| |||||| ||||    
T  7161905 cccagaccccaacacacaagctgagcc 7161931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 34378492 - 34378264
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||          |||||||||||    
T  34378492 aaggcatggacgagacgagatacaaatggtgccgcatatagacggtacaccataaccatctaaaaacacccctgaagataaacccacaaaaacacatcac 34378393  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||| |||     | |||||||||||| |||||||||   || | |||||| |||||  |||||||||||| |||||||| |||||||| |||    
T  34378392 cacctaaaacaaact-aaaaaaaaaaaacaagca-tgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataa 34378295  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     ||||  | ||||||||||||||||| ||||    
T  34378294 aactctcaaaccccaacacccaagctgagcc 34378264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 698768 - 698678
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  698768 caagacgtaaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacactataaccacctaaaaacacccttgaagataaac 698678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 7452981 - 7452915
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 75  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7452981 aaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 7452915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 5656781 - 5656862
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaa 90  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||| | ||| ||||||||    
T  5656781 aaggtatgaacgaaataagatacaaatgatgccgcatatagacggtacatgataaccacctaaaaacacaccttaagataaa 5656862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 18313342 - 18313393
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 60  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  18313342 aaggtatggatgaaacaagatgcaaatggtgccgcatatagacggtacacca 18313393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 41250893 - 41250944
Alignment:
Q  21 aaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaa 72  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  41250893 aaacaagatataaatggtgccgcatatagacggtacaccataaccacgtaaa 41250944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 18255140 - 18255192
Alignment:
Q  11 ggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 63  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  18255140 ggtatagacgaaacaagatacaaatagtgccgcatatagacggtacatcataa 18255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 7195078 - 7195113
Alignment:
Q  90 acacatcaccacctaaaacagactccttcacaaaaa 125  Q
    |||| |||||||||||||||||||||||||||||||    
T  7195078 acacgtcaccacctaaaacagactccttcacaaaaa 7195113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 698591 - 698527
Alignment:
Q  165 cactactcacccccaaagaaccccctcaaactaacactcctacaccccaacacccaagcttagcc 229  Q
    |||||||||||| |||||||| ||||| || ||| ||||  | ||||||||||||||||| ||||    
T  698591 cactactcacccacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgagcc 698527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 30097636 - 30097593
Alignment:
Q  90 acacatcaccacctaaaacagactccttcacaaaaaacaagcact 134  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||    
T  30097636 acacgtcaccacctaaaacagactccttcac-gaaaacaagcact 30097593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 30964830 - 30964628
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||| | |||| ||||          |||||||||||    
T  30964830 aaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacctaaaaacactcctggagataaacccaccaaaacacatcac 30964731  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    ||||||||||||||||   || ||||| || |||||||||| || | |||| ||||||||||||| |||||||||||| |||||||| |||||||| |||    
T  30964730 cacctaaaacagactc---caaaaaaatcacgcactgtaaatacgatattcaccaccgcccatcatcactactcacccacaaagaacaccctcaaaataa 30964634  T
Q  199 cactcc 204  Q
     |||||    
T  30964633 aactcc 30964628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 8255428 - 8255193
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaa 90  Q
    ||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||||||          |||    
T  8255428 caagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacctaaaaacactcctgaagataaactcacaaaaa 8255329  T
Q  91 cacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccct 190  Q
    ||||||||||||||||||||||||   || | ||||||||||||||||||||   || | ||||  ||||||  |||||||||||| |||||||| ||||    
T  8255328 cacatcaccacctaaaacagactc---caaataaaacaagcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccct 8255232  T
Q  191 caaactaacactcctacaccccaacacccaagcttagcc 229  Q
    |||| ||| ||||  | |||| |||||||||||| ||||    
T  8255231 caaaataaaactcacagaccctaacacccaagctgagcc 8255193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 8268846 - 8268611
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaa 90  Q
    ||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||||||          |||    
T  8268846 caagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacctaaaaacactcctgaagataaactcacaaaaa 8268747  T
Q  91 cacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccct 190  Q
    ||||||||||||||||||||||||   || | ||||||||||||||||||||   || | ||||  ||||||  |||||||||||| |||||||| ||||    
T  8268746 cacatcaccacctaaaacagactc---caaataaaacaagcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccct 8268650  T
Q  191 caaactaacactcctacaccccaacacccaagcttagcc 229  Q
    |||| ||| ||||  | |||| |||||||||||| ||||    
T  8268649 caaaataaaactcacagaccctaacacccaagctgagcc 8268611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 8705829 - 8706059
Alignment:
Q  10 aggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat------aaacacatcaccacct 103  Q
    ||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||      ||||||||||||||||    
T  8705829 aggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataaccacctaaaaacacccttgaagatccacaaaaacacatcaccacct 8705928  T
Q  104 aaaacagactc-----cttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaa 198  Q
    |||| ||||||         | ||||||||||||||||||||||   || | |||| |||||||  |||||| ||||| |||||||| |||||||| |||    
T  8705929 aaaatagactcaaaaaaaaaaaaaaaaacaagcactgtaaacacagtatccaccactgcccatcgtcactacccacccacaaagaacaccctcaaaataa 8706028  T
Q  199 cactcctacaccccaacacccaagcttagcc 229  Q
     |||| || ||||||||||||||||| ||||    
T  8706029 aactcttagaccccaacacccaagctgagcc 8706059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 20464982 - 20464791
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac----------acatcac 98  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||          |||||||    
T  20464982 aaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacaccataaccacctaaaaacacccctgaagataaacccaccaacatacatcac 20464883  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaa 194  Q
    ||||||||||| |   ||||| ||||||||| | ||||||||||   || | ||||||||||||  ||||||||||||||||| ||| ||||||||    
T  20464882 cacctaaaacaaa---cttca-aaaaaacaaaccctgtaaacacggtatccaccaccgcccatcgtcactactcacccccaaataacaccctcaaa 20464791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 27555619 - 27555701
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  27555619 aaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacctaaaaacacccctgaagataaac 27555701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35329408 - 35329318
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  35329408 caagacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaatacccatgaagataaac 35329318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 49528483 - 49528421
Alignment:
Q  5 acataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49528483 acataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaaccac 49528421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 36689494 - 36689575
Alignment:
Q  10 aggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||| ||||||| |||||||||||||||    
T  36689494 aggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataaccacttaaaaacacccctgaagataaac 36689575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7703087 - 7703018
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaa 71  Q
    ||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7703087 caagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacctaa 7703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 46698467 - 46698525
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 67  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46698467 aaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 4306097 - 4306033
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 74  Q
    |||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4306097 aaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataaccacctaaaaa 4306033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 35341044 - 35341097
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 65  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35341044 gtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 2826174 - 2826118
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 65  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  2826174 aaggtatggacggaacaagatacaaatggtgccgcatatatacggtacaccataacc 2826118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 11281417 - 11281493
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataa 89  Q
    ||||||||||||| |||| ||||||||| | |||||||||||| ||||||||||||||||||| || ||||||||||    
T  11281417 tatggacgaaacatgatataaatggtgctgtatatagacggtataccataaccacctaaaaacacctctgaagataa 11281493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 31050352 - 31050408
Alignment:
Q  12 gtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 68  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  31050352 gtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccacc 31050408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 30167251 - 30167472
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgca--tatagacggtacaccataaccacctaaaaactcccctgaagataaac----------acatc 96  Q
    |||||||||||||||||||||||||||| |||   |  |||||||||||||| ||||||| |||||||  || ||||||||||||          |||||    
T  30167251 aaggtatggacgaaacaagatacaaatgatgcaaaaaatatagacggtacactataaccatctaaaaataccactgaagataaacccaccaaaacacatc 30167350  T
Q  97 accacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaact 196  Q
    ||  |||||||||||||||   | ||||| ||||||||||||||||   || | |||||||| | |  ||| |||||||| |||||||| |||||||| |    
T  30167351 acatcctaaaacagactcc---aaaaaaatcaagcactgtaaacacggtatccaccaccgccaa-cgtcaccactcacccacaaagaacaccctcaaaat 30167446  T
Q  197 aacactcctacaccccaacacccaag 222  Q
    || ||||| | |||||||||||||||    
T  30167447 aaaactcccataccccaacacccaag 30167472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 52868792 - 52868859
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 68  Q
    |||||| ||||||||| |||||  ||||||||||||||| ||| ||||||||||||||||||||||||    
T  52868792 caagacgtaaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 9750159 - 9750116
Alignment:
Q  10 aggtatggacgaaacaagatacaaatggtgccgcatatagacgg 53  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  9750159 aggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 2361 - 2443
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 91  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  2361 aaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacctaaaaacacccttgaagataaac 2443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 10542220 - 10541998
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac----------acatcaccacc 102  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||          ||| |||||||    
T  10542220 tatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataaccacctaaaaacacccctgaagataaacccatcaaattacaccaccacc 10542121  T
Q  103 taaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacact 202  Q
    ||||||| |||||     |||||||||||||| |||| ||   || | ||||||||||||  |||||||||||| |||||||  ||||| || ||| |||    
T  10542120 taaaacaaactcc----aaaaaaacaagcactttaaatacggtatccaccaccgcccatcgtcactactcacccacaaagaataccctccaaataaaact 10542025  T
Q  203 cctacaccccaacacccaagcttagcc 229  Q
     | | ||||||||||||||||| ||||    
T  10542024 tccagaccccaacacccaagctgagcc 10541998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 3254350 - 3254211
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac----------acatcac 98  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||||||| |||||||| ||||||          |||||||    
T  3254350 aaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacaccatagccacctaaaaacacccctgaaaataaacccaccaaaatacatcac 3254251  T
Q  99 cacctaaaacagactccttcacaaaaaacaagcactgtaaacac 142  Q
    |||||||||||||||||     ||||||||||||| ||||||||    
T  3254250 cacctaaaacagactcc----aaaaaaacaagcaccgtaaacac 3254211  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3117895 - 3117821
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 75  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  3117895 caagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataaccacctaaaaac 3117821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 14663384 - 14663249
Alignment:
Q  88 aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccc 187  Q
    ||||||||||||||||||||||||||||   | ||| || ||||||||||||||| | || | ||||||||||||  |||||||||||| ||||||||      
T  14663384 aaacacatcaccacctaaaacagactccaaaaaaaacaaaaagcactgtaaacacaatatccaccaccgcccatcgtcactactcacccgcaaagaacat 14663285  T
Q  188 cctcaaactaacactcctacaccccaacacccaagc 223  Q
    ||||||| ||| ||||| | ||||||||| ||||||    
T  14663284 cctcaaaataaaactcccaaaccccaacatccaagc 14663249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 33697789 - 33697843
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 15944392 - 15944274
Alignment:
Q  9 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 98  Q
    |||||||||||  || ||||||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||| ||          |||||||||||    
T  15944392 aaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacaccataaacacctaaaaatacccctgaatataaacccaccaaaacacatcac 15944293  T
Q  99 cacctaaaacagactcctt 117  Q
    |||||||||||||||||||    
T  15944292 cacctaaaacagactcctt 15944274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15132520 - 15132573
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggt 54  Q
    |||||| |||||||||||| |||||||||||||||| ||||| |||||||||||    
T  15132520 caagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacggt 15132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 15120380 - 15120416
Alignment:
Q  90 acacatcaccacctaaaacagactccttcacaaaaaa 126  Q
    ||||||||||||||||||||||||| |||||||||||    
T  15120380 acacatcaccacctaaaacagactcattcacaaaaaa 15120416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 48736 - 48648
Alignment:
Q  1 caagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataa 89  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  48736 caagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccttaaagataa 48648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 6094 - 5872
Alignment:
Q  13 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat-----------aaacacatcaccac 101  Q
    |||| |||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||| || ||||||||           ||||||||||||||    
T  6094 tatgaacgagacaagatacaaatggtgccgtatatagacgttacatcataaccacctaaaaacacctctgaagataaaccccacaaaaacacatcaccac 5995  T
Q  102 ctaaaacagactccttcacaaaaaacaagcactgtaaacaccacattccccaccgcccatcaccactactcacccccaaagaaccccctcaaactaacac 201  Q
    |||||| |||   ||||| ||||||||||||| |||||||    || | ||||| ||||||| |||||||||||| |||| ||| |||||||| ||| ||    
T  5994 ctaaaa-aga---cttca-aaaaaacaagcaccgtaaacatggtatccaccacctcccatcatcactactcacccacaaaaaacaccctcaaaataaaac 5900  T
Q  202 tcctacaccccaacacccaagcttagcc 229  Q
    ||| | | ||||||||||||||| ||||    
T  5899 tcccagatcccaacacccaagctgagcc 5872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 19309 - 19245
Alignment:
Q  11 ggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa-ccacctaaaaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19309 ggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacccacctaaaaa 19245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 35554 - 35603
Alignment:
Q  88 aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacac 142  Q
    |||||||||| ||||||||||||||||     |||||||||||||||||||||||    
T  35554 aaacacatcatcacctaaaacagactc-----caaaaaacaagcactgtaaacac 35603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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