View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_32 (Length: 229)
Name: NF0787_low_32
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_32 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38608712 - 38608940
Alignment:
| Q |
1 |
aacggtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatgatctttctatat |
100 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38608712 |
aacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatat |
38608811 |
T |
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| Q |
101 |
tctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttggaactgc |
200 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
38608812 |
tctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatcttgagaagcttccagttggaactgc |
38608911 |
T |
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| Q |
201 |
tctgcctacattggagcgaggtcagccgc |
229 |
Q |
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| T |
38608912 |
tctgcctacattggagcgaggtcagccgc |
38608940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38793495 - 38793723
Alignment:
| Q |
1 |
aacggtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatgatctttctatat |
100 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38793495 |
aacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatat |
38793594 |
T |
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| Q |
101 |
tctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttggaactgc |
200 |
Q |
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| T |
38793595 |
tctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatcttgagaagcttccagttggaactgc |
38793694 |
T |
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| Q |
201 |
tctgcctacattggagcgaggtcagccgc |
229 |
Q |
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| T |
38793695 |
tctgcctacattggagcgaggtcagccgc |
38793723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 38121411 - 38121183
Alignment:
| Q |
1 |
aacggtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatgatctttctatat |
100 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
38121411 |
aacggtttcagcatcctctcccttgctatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgctgttgatgatctttctatat |
38121312 |
T |
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| Q |
101 |
tctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttggaactgc |
200 |
Q |
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|||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |
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| T |
38121311 |
tctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcattacttgtcaatcgccgatcttgagaagcttccggttggaactgc |
38121212 |
T |
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| Q |
201 |
tctgcctacattggagcgaggtcagccgc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38121211 |
tctgcctacattggagcgaggtcagccgc |
38121183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28730985 - 28730757
Alignment:
| Q |
1 |
aacggtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatgatctttctatat |
100 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28730985 |
aacggtttcagcatcctctcccttgcaatgaaggtaaaatacgaagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatat |
28730886 |
T |
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| Q |
101 |
tctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttggaactgc |
200 |
Q |
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|||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
28730885 |
tctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgttacttgtcaatcgccgatcttgagaagcttccagttggaactgc |
28730786 |
T |
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| Q |
201 |
tctgcctacattggagcgaggtcagccgc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28730785 |
tctgcctacattggagcgaggtcagccgc |
28730757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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