View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_34 (Length: 224)
Name: NF0787_low_34
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 26965566 - 26965760
Alignment:
| Q |
1 |
caatggatttgtaggtggtggattcgccgatggagcgtatgcatgatgtgaagatgtaggtggtagcgtgtatcacgatggtgtaagtttcggtggtgaa |
100 |
Q |
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| T |
26965566 |
caatggatttgtaggtggtggattcaccgatggagcgtatgcatgatgtgaatatgtaggtggtagcgtgtatcccgatggtgtaagtttcggtggtgca |
26965665 |
T |
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| Q |
101 |
tatgcattttgttgatacacagatgatgaagtatgggtaggtggaggaggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcgg |
195 |
Q |
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| T |
26965666 |
tatgcattttgttgatacacagctgatgaagtatgggtaggtggaggcggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcgg |
26965760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 26965958 - 26966096
Alignment:
| Q |
57 |
taggtggtagcgtgtatcacgatggtgtaagtttcggtggtgaatatgcattttgttgatacacagatgatgaagtatgggtaggtggaggaggagcata |
156 |
Q |
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| T |
26965958 |
taggtggtagtgtgtatcccgatggtgtatgttttggtggtgcataggcatgttgtggatacacaggtgatgaagtatgcgtaggtggaggcggagcata |
26966057 |
T |
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| Q |
157 |
tgtatgagaagatggaatctgtgtatgtgcagtcgtcgg |
195 |
Q |
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| T |
26966058 |
tgtatgaggagatggagtctgtatatgtgcagccgtcgg |
26966096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 26965891 - 26965936
Alignment:
| Q |
5 |
ggatttgtaggtggtggattcgccgatggagcgtatgcatgatgtg |
50 |
Q |
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| T |
26965891 |
ggatttgtaggtggtgtattcgccgatggagcatatgcatgatgtg |
26965936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 26965380 - 26965439
Alignment:
| Q |
136 |
ggtaggtggaggaggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcgg |
195 |
Q |
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|||||||||||| ||| |||| ||||||| |||||||||||||||||| |||||| |||| |
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| T |
26965380 |
ggtaggtggaggtggaacataggtatgaggagatggaatctgtgtatgcgcagtcatcgg |
26965439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 26965082 - 26965142
Alignment:
| Q |
135 |
gggtaggtggaggaggagcatatgtatgagaagatggaatctgtgtatgtgcagtcgtcgg |
195 |
Q |
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||||||||||||| ||| ||| ||||||||||||||| || |||||||||||||| |||| |
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| T |
26965082 |
gggtaggtggaggcagagtataggtatgagaagatggagtccgtgtatgtgcagtcatcgg |
26965142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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