View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_4 (Length: 600)
Name: NF0787_low_4
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 106 - 584
Target Start/End: Complemental strand, 35013159 - 35012690
Alignment:
| Q |
106 |
tatcatgatgatatgtagtaagaatcatattctatttcaagatgaggagagcctacacatttcatacaaactac--tctccattctatatatatctttgg |
203 |
Q |
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| T |
35013159 |
tatcatgatgatatgtagtaagaatcatattctatttcaagatgaggagagcgtacacatttcatacaaactacgatctccattctatatatat--ttgg |
35013062 |
T |
|
| Q |
204 |
tggtttaagatttttgtacaaagggtattgttgaaacacaaatgtaaattattaaatattgaatttctagtaaactcattgttttggaacaaaaatataa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |
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| T |
35013061 |
tggtttaagatttttgtacaaagggtattgttgaaacacaaatgtaaattattaaatattgaaattctagtaaactcattgttttggaacgaaa-tataa |
35012963 |
T |
|
| Q |
304 |
taagttaccaaactaccaaatatttagaatttatttagggagtaattcagccaatgtttcaacttaatgcatgcatgtgatccacgaacgaaagcaacta |
403 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35012962 |
taagttaccaaactaccaaatatttagaatttatt----gagtaattcagccaatgtttcaacttaatgcatg----tgatccacgaacgaaagcaacta |
35012871 |
T |
|
| Q |
404 |
ctgttgctgcatttgagttgagttaacggtctctatagtctataatgaaaaatggttcgctagtaatttattaggacaacaaaaattgggtggtagacaa |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35012870 |
ctgttgctgcatttgagttgagttaacggtctctatagtctataatgaaaaatggttcgctagtaatttattaggacaacaaaaattgggtggtagacaa |
35012771 |
T |
|
| Q |
504 |
ggtaagtgtttaaaaatcagagtaggtgcaaatgaaaattgtaatttatacatgtgatcaatgtcttgttcgtagtttcat |
584 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35012770 |
ggtaagtgtttaaaaatcagagtaggtgcaaatgaaaattgtaatttatacatgtgatcaatgtcttgttcgtagtttcat |
35012690 |
T |
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