View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_6 (Length: 455)
Name: NF0787_low_6
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 133 - 451
Target Start/End: Complemental strand, 28730913 - 28730595
Alignment:
| Q |
133 |
attttcgccgttgatgatctttctatattctctggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgctacttgtcaatcgccg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28730913 |
attttcgccgttgatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgttacttgtcaatcgccg |
28730814 |
T |
|
| Q |
233 |
atcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttctggtggaggagtgacattagcaccgat |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28730813 |
atcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtgacattagcaccgat |
28730714 |
T |
|
| Q |
333 |
gagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctatt |
432 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28730713 |
gaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctatt |
28730614 |
T |
|
| Q |
433 |
ggggctgcctatgatacta |
451 |
Q |
| |
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| || ||| |||||||||| |
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| T |
28730613 |
gcggatgcttatgatacta |
28730595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 133 - 451
Target Start/End: Original strand, 38608784 - 38609102
Alignment:
| Q |
133 |
attttcgccgttgatgatctttctatattctctggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgctacttgtcaatcgccg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
38608784 |
attttcgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccg |
38608883 |
T |
|
| Q |
233 |
atcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttctggtggaggagtgacattagcaccgat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||| |
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| T |
38608884 |
atcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgat |
38608983 |
T |
|
| Q |
333 |
gagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctatt |
432 |
Q |
| |
|
||| ||||||||||| || || ||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38608984 |
gaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctatt |
38609083 |
T |
|
| Q |
433 |
ggggctgcctatgatacta |
451 |
Q |
| |
|
| |||||| |||||||||| |
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|
| T |
38609084 |
gcggctgcttatgatacta |
38609102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 133 - 451
Target Start/End: Original strand, 38793567 - 38793885
Alignment:
| Q |
133 |
attttcgccgttgatgatctttctatattctctggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgctacttgtcaatcgccg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
38793567 |
attttcgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccg |
38793666 |
T |
|
| Q |
233 |
atcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttctggtggaggagtgacattagcaccgat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||| |
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|
| T |
38793667 |
atcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgat |
38793766 |
T |
|
| Q |
333 |
gagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctatt |
432 |
Q |
| |
|
||| ||||||||||| || || ||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
38793767 |
gaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctatt |
38793866 |
T |
|
| Q |
433 |
ggggctgcctatgatacta |
451 |
Q |
| |
|
| |||||| |||||||||| |
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| T |
38793867 |
gcggctgcttatgatacta |
38793885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 133 - 451
Target Start/End: Complemental strand, 38121339 - 38121021
Alignment:
| Q |
133 |
attttcgccgttgatgatctttctatattctctggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgctacttgtcaatcgccg |
232 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38121339 |
attttcgctgttgatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcattacttgtcaatcgccg |
38121240 |
T |
|
| Q |
233 |
atcttgagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttctggtggaggagtgacattagcaccgat |
332 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||| |
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| T |
38121239 |
atcttgagaagcttccggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgat |
38121140 |
T |
|
| Q |
333 |
gagaattaactatgttagggtgaagtttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctatt |
432 |
Q |
| |
|
||| ||||||||||| || || ||| |||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
38121139 |
gaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgcatatcaatcctatt |
38121040 |
T |
|
| Q |
433 |
ggggctgcctatgatacta |
451 |
Q |
| |
|
| |||||| |||||||||| |
|
|
| T |
38121039 |
gcggctgcttatgatacta |
38121021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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