View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_8 (Length: 450)
Name: NF0787_low_8
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 35804264 - 35803980
Alignment:
| Q |
14 |
ataaaacaaattagattattcttcaacatgaataatttagnnnnnnnnn--cttcttctcataatagaacatgagattccaactaaaagatatatgcaat |
111 |
Q |
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| T |
35804264 |
ataaaacaaattagattattcttcaacatgaataatttagtttttttttttcttcttctcataatagaacatgagattccaactaaaagatatatgcaat |
35804165 |
T |
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| Q |
112 |
agaatattccttctatgtttgtattattagtatatgaaaacaaatcctatacacatggagatcactcatacacaacaagtaaccgctactttatataata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35804164 |
agaatattccttctatgtttgtattattagtatatgaaaacaaatcctatacacatggagatcactcatacacaacaagtaaccgctactttatataata |
35804065 |
T |
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| Q |
212 |
gaataggaaaagtcctttgtttcatccatatctctgccttatatacttaggtcagaaatatatctcacaaccatcttatccattt |
296 |
Q |
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| T |
35804064 |
gaataggaaaagtcctttgtttcatccatatctctgccttatatacttaggtcagaaatatatctcacaaccatcttatccattt |
35803980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 341 - 421
Target Start/End: Complemental strand, 35803941 - 35803861
Alignment:
| Q |
341 |
tcttcatgagggtcttaaggttgaactattttcttctgggattgttggagccatggccagatgatggcacaaggaagtgag |
421 |
Q |
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| T |
35803941 |
tcttcatgagggtcttaaggttgaactattttcttctgggattgttggagccatggccagatgatggcacaaggaagtgag |
35803861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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