View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0787_low_9 (Length: 433)
Name: NF0787_low_9
Description: NF0787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0787_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 28 - 425
Target Start/End: Complemental strand, 42663360 - 42662961
Alignment:
| Q |
28 |
catatagcatgttagaagggacactaaaacatgacctaaaatagaagcaatgatggatgaattataagtgtgagagctgtttatttcataatgtacgaaa |
127 |
Q |
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| T |
42663360 |
catatagtatgttagaagggacactaaaacatgacctaatatagaagcaatgatggatgaattataagtgtgagagctgtt-atttcataatgtacgaaa |
42663262 |
T |
|
| Q |
128 |
taattatttctcctgattgatgaaaggcaggacacaatccatataaaatttcaaaataaacattnnnnnnnnnn---ctgaatcttataataacttctca |
224 |
Q |
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| T |
42663261 |
taattatttctcctgattgatgaaaggcaggacacaatccatataaaatttcaaaataaacattaaaaaaaaaaaaactgaatcttataataacttctca |
42663162 |
T |
|
| Q |
225 |
ttctatttacacctgaatgatatcgacagacataactgctcatccaccagaagaaggttcatgcagctgatctcgtttggattctctttgtcaggaatgc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42663161 |
ttctatttacacctgaatgatatcgacagacataacgtctcatccaccagaagaaggttcatgcagctgatctcgttaggattctctttgtcaggaatgc |
42663062 |
T |
|
| Q |
325 |
accagatatggccaacccgaatcttcattttcagtcccttccttccaccagataccaaagaaataggagtaaaaatggatgccatggttatgagtataat |
424 |
Q |
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| T |
42663061 |
atcagatatggccaacccgaatcttcattttcagtcccttccttccaccagataccaaagaaattggagtaaaaatggatgccatggttatgagtaaaat |
42662962 |
T |
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