View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0788_high_5 (Length: 411)

Name: NF0788_high_5
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0788_high_5
NF0788_high_5
[»] chr4 (5 HSPs)
chr4 (65-355)||(46873629-46873919)
chr4 (1-139)||(46890979-46891117)
chr4 (182-321)||(46891255-46891396)
chr4 (222-281)||(18968310-18968369)
chr4 (252-281)||(35522102-35522131)
[»] chr1 (3 HSPs)
chr1 (65-166)||(48232114-48232215)
chr1 (65-166)||(48237154-48237255)
chr1 (236-281)||(26238437-26238482)
[»] chr7 (1 HSPs)
chr7 (222-270)||(28726955-28727003)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 65 - 355
Target Start/End: Original strand, 46873629 - 46873919
Alignment:
Q  65 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgactattat 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46873629 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggtggactttgtgctagttggcatatgctactgtgactattat 46873728  T
Q  165 acgatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873729 acgatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcac 46873828  T
Q  265 aatattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgctctgcaatagctccaatgcagccgctatttaacaa 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873829 aatattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgctctgcaatagctccaatgcagccgctatttaacaa 46873919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 46890979 - 46891117
Alignment:
Q  1 ttgtctctttgctttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcaaatttct 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890979 ttgtccctttgccttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcaaatttct 46891078  T
Q  101 tccataattaagccgtggcatggcggactttgtgctagt 139  Q
     |||||| |  || |||||||||||||||||||||||||    
T  46891079 gccataaatgggctgtggcatggcggactttgtgctagt 46891117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 46891255 - 46891396
Alignment:
Q  182 acattgtgttgttaattgcggttcgcggaaaaatatgct-agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaa 280  Q
    ||||||||||||||||||| ||| |||||| ||| || | ||||| || |  | |||| ||||||||| |||||||||||||||||||||||| ||||||    
T  46891255 acattgtgttgttaattgcagtttgcggaataatgtggttagttccaaatatgttctgtaatagtgctatagccgctatttcacaatattttgtactaaa 46891354  T
Q  281 tgacttttcg-cggggcattagcgagttgttcaaatcccgct 321  Q
    | |  ||| |  |||||| ||| || ||||||||||||||||    
T  46891355 taaagtttggtgggggcaatagtgatttgttcaaatcccgct 46891396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 18968369 - 18968310
Alignment:
Q  222 gttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaat 281  Q
    ||||||||| |||| |||||||||| | |||||||||||| |||| |||||| |||||||    
T  18968369 gttcaaattacgctatgcaatagtgttatagccgctatttgacaacattttgtactaaat 18968310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Complemental strand, 35522131 - 35522102
Alignment:
Q  252 gccgctatttcacaatattttgcactaaat 281  Q
    ||||||||||||||||||||||||||||||    
T  35522131 gccgctatttcacaatattttgcactaaat 35522102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 48232215 - 48232114
Alignment:
Q  65 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgactattat 164  Q
    |||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||||||    
T  48232215 ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgactattat 48232116  T
Q  165 ac 166  Q
    ||    
T  48232115 ac 48232114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 48237255 - 48237154
Alignment:
Q  65 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgactattat 164  Q
    |||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||||||    
T  48237255 ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgactattat 48237156  T
Q  165 ac 166  Q
    ||    
T  48237155 ac 48237154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 26238437 - 26238482
Alignment:
Q  236 ctgcaatagtgctttagccgctatttcacaatattttgcactaaat 281  Q
    ||||||||||||| ||||||||||||  |||||||||| |||||||    
T  26238437 ctgcaatagtgctatagccgctatttggcaatattttgtactaaat 26238482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 28727003 - 28726955
Alignment:
Q  222 gttcaaattccgctctgcaatagtgctttagccgctatttcacaatatt 270  Q
    |||||||||||||| ||||| |||||  ||||| |||||||||||||||    
T  28727003 gttcaaattccgctatgcaacagtgccatagccactatttcacaatatt 28726955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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