View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0788_low_1 (Length: 491)

Name: NF0788_low_1
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0788_low_1
NF0788_low_1
[»] chr4 (1 HSPs)
chr4 (29-491)||(12847678-12848140)


Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 29 - 491
Target Start/End: Complemental strand, 12848140 - 12847678
Alignment:
Q  29 acacatgtcctccaccaaatatgccttaaatctaaaatgttgacattccatatcataaaataatatacctaaaatagtaaacaaatttcaaagggtgtta 128  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12848140 acacatgtcctgcaccaaatatgccttaaatctaaaatgttgacattccatatcataaaataatatacctaaaatagtaaacaaatttcaaagggtgtta 12848041  T
Q  129 ttggtggtgacgtaatagaacagctaactctttagcgcccttactttttacaaaaaagtgccaaccctaacacatacagatgaggcatggtggcccattt 228  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12848040 ttggtggtgacgtaatagaacagctaactctttagcacccttactttttacaaaaaagtgccaaccctaacacatacagatgaggcatggtggcccattt 12847941  T
Q  229 aggacccctactctattcttagtccctaccattttccaccatctgcaattctctgaactgtaattaagttgttatgatgatctttgagaagtgacattgg 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12847940 aggacccctactctattcttagtccctaccattttccaccatctgcaattctctgaactgtaattaagttgttatgatgatctttgggaagtgacattgg 12847841  T
Q  329 atctcgtggatgttctatggtccttatatgctaaatattgaaaagcttgttcatggcttctcttctttttcccttttttattagttgtgtatcgttagtg 428  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  12847840 atctcgtggatgttctatggtccttatatgccaaatattgaaaagcttgttcatggcttctcttctttgtccctttcttattagttttgtatcgttagtg 12847741  T
Q  429 atggttgtacatcttataagtagacaaatgatataattagttcgtgcaggctttgcatttcat 491  Q
    |||||||| || ||||||| ||||| ||||||||||||||||| ||||||| |||||||||||    
T  12847740 atggttgttcagcttataattagactaatgatataattagttcttgcaggccttgcatttcat 12847678  T

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