View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0788_low_1 (Length: 491)
Name: NF0788_low_1
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0788_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 29 - 491
Target Start/End: Complemental strand, 12848140 - 12847678
Alignment:
| Q |
29 |
acacatgtcctccaccaaatatgccttaaatctaaaatgttgacattccatatcataaaataatatacctaaaatagtaaacaaatttcaaagggtgtta |
128 |
Q |
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| T |
12848140 |
acacatgtcctgcaccaaatatgccttaaatctaaaatgttgacattccatatcataaaataatatacctaaaatagtaaacaaatttcaaagggtgtta |
12848041 |
T |
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| Q |
129 |
ttggtggtgacgtaatagaacagctaactctttagcgcccttactttttacaaaaaagtgccaaccctaacacatacagatgaggcatggtggcccattt |
228 |
Q |
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| T |
12848040 |
ttggtggtgacgtaatagaacagctaactctttagcacccttactttttacaaaaaagtgccaaccctaacacatacagatgaggcatggtggcccattt |
12847941 |
T |
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| Q |
229 |
aggacccctactctattcttagtccctaccattttccaccatctgcaattctctgaactgtaattaagttgttatgatgatctttgagaagtgacattgg |
328 |
Q |
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| T |
12847940 |
aggacccctactctattcttagtccctaccattttccaccatctgcaattctctgaactgtaattaagttgttatgatgatctttgggaagtgacattgg |
12847841 |
T |
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| Q |
329 |
atctcgtggatgttctatggtccttatatgctaaatattgaaaagcttgttcatggcttctcttctttttcccttttttattagttgtgtatcgttagtg |
428 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |
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| T |
12847840 |
atctcgtggatgttctatggtccttatatgccaaatattgaaaagcttgttcatggcttctcttctttgtccctttcttattagttttgtatcgttagtg |
12847741 |
T |
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| Q |
429 |
atggttgtacatcttataagtagacaaatgatataattagttcgtgcaggctttgcatttcat |
491 |
Q |
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| T |
12847740 |
atggttgttcagcttataattagactaatgatataattagttcttgcaggccttgcatttcat |
12847678 |
T |
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