View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0788_low_11 (Length: 351)
Name: NF0788_low_11
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0788_low_11 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 65 - 343
Target Start/End: Complemental strand, 3149495 - 3149213
Alignment:
| Q |
65 |
atagcaagattgaatattgtcaaacttttaaagttcatccctccatttttcttttg--catagatggcttatacgaa--gacaatcaatttattcatttg |
160 |
Q |
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| T |
3149495 |
atagcaagattgaatattgtcaaacttttaaacttcatccctccatttttttttttttcatagataacttatacgaaaagacaattaatttattcatttg |
3149396 |
T |
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| Q |
161 |
ctttgggcccctaaatgaccccactaaaagaagtttattattttttcaatcccattgcataaagtcatcggaagagtaaacaaactcataaaataaattg |
260 |
Q |
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| T |
3149395 |
ttttgggctcctgaatgaccccactaaaagaagtttatcattttttcaatcccatcgcataaagtcattggaagagtaaacaaactcataaaataagttg |
3149296 |
T |
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| Q |
261 |
gtattgattgaagaaccgacttgattaatactttaggcctgacctttgagagactttcactacttcatgagttaatattcttc |
343 |
Q |
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| T |
3149295 |
gtattgattgaagaaccgacttgattaatacttttggcctgacctttgagagactttcactactccatgagttaattttcttc |
3149213 |
T |
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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 204606 - 204648
Alignment:
| Q |
85 |
caaacttttaaagttcatccctccatttttcttttgcatagat |
127 |
Q |
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| T |
204606 |
caaacttttaaagctcatccctccatctttcttgtgcatagat |
204648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 24176347 - 24176305
Alignment:
| Q |
85 |
caaacttttaaagttcatccctccatttttcttttgcatagat |
127 |
Q |
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| T |
24176347 |
caaacttttaaagctcatccctccatctttcttgtgcatagat |
24176305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 13501957 - 13501915
Alignment:
| Q |
85 |
caaacttttaaagttcatccctccatttttcttttgcatagat |
127 |
Q |
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| T |
13501957 |
caaacttttaaagctcatccctccatctttcttgtgcatagat |
13501915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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