View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0788_low_15 (Length: 314)
Name: NF0788_low_15
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0788_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 11019865 - 11019647
Alignment:
| Q |
6 |
atgaatggatacttgttattatatcggaaaacaaaagatgcaatccttaacctttgttgtggtgttactaatactgatattctcatacaatattgcagat |
105 |
Q |
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| T |
11019865 |
atgaatggatacttgttattatatcggaaaacaaaaaatgcaatccttaacctttgttgtggtgttactaatactgatattctcgtacaatattgcagat |
11019766 |
T |
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| Q |
106 |
ggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaata |
205 |
Q |
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| T |
11019765 |
ggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaata |
11019666 |
T |
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| Q |
206 |
ggtacaacctatcatgtga |
224 |
Q |
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||||||||||||||||||| |
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| T |
11019665 |
ggtacaacctatcatgtga |
11019647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 10988599 - 10988479
Alignment:
| Q |
104 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaa |
203 |
Q |
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| T |
10988599 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaa |
10988500 |
T |
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| Q |
204 |
taggtacaacctatcatgtga |
224 |
Q |
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| T |
10988499 |
taggtacaacctatcatgtga |
10988479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 11009810 - 11009614
Alignment:
| Q |
28 |
atcggaaaacaaaagatgcaatccttaacctttgttgtggtgttactaatactgatattctcatacaatattgcagatggtgatgaacaacaagagtcat |
127 |
Q |
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| T |
11009810 |
atcggaaaaccaaaaatgccatccttaacccttgttgtggtgttactaatactgatattctcgtacaatgtagatggtgatgttgaacatcaagagtcat |
11009711 |
T |
|
| Q |
128 |
gttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaataggtacaacctatcatgtga |
224 |
Q |
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| T |
11009710 |
gttcaagaaggtgcggtgttcatagcatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaaaaggtacatcctatcatgtga |
11009614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 11035213 - 11035018
Alignment:
| Q |
29 |
tcggaaaacaaaagatgcaatccttaacctttgttgtggtgttactaatactgatattctcatacaatattgcagatggtgatgaacaacaagagtcatg |
128 |
Q |
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| T |
11035213 |
tcggaaaacaaaaaatgtcttccttaacctttgttgtgctgttactaatactgatattctcgtataacaaagtgtatggtgatgaacaccaagactcatg |
11035114 |
T |
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| Q |
129 |
ttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaataggtacaacctatcatgtga |
224 |
Q |
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||| || |||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||| ||| | |||||||||||||||||||| |
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| T |
11035113 |
ttctcgatggtgcggtgttcataacatcaggtctcctttccgcttgaaagacagtcctaaagaatgtggcgacgaaaggtacaacctatcatgtga |
11035018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 10999807 - 10999927
Alignment:
| Q |
104 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaa |
203 |
Q |
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|||| |||||||||||||||||||| || | |||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
10999807 |
atggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaactgtggtgacaa |
10999906 |
T |
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| Q |
204 |
taggtacaacctatcatgtga |
224 |
Q |
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|||||||| | |||||||||| |
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| T |
10999907 |
taggtacatcttatcatgtga |
10999927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 11002784 - 11002904
Alignment:
| Q |
104 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaa |
203 |
Q |
| |
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|||| |||||||||||||| ||||| || | ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
11002784 |
atggagatgaacaacaagattcatgctctacaaggtgcggtgaccataacataagccaccctttccgattgaaagacagtcccgaaaactgtggtgacaa |
11002883 |
T |
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| Q |
204 |
taggtacaacctatcatgtga |
224 |
Q |
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| T |
11002884 |
aaggtacatcttatcatgtga |
11002904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 10922286 - 10922166
Alignment:
| Q |
104 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaa |
203 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
10922286 |
atggtgatgaacaccaagagtcatgttctcgatggtgcggtgttcataacatcaggtctcctttccgcttgaaagacagtcctaaaaagtgtggtgacaa |
10922187 |
T |
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| Q |
204 |
taggtacaacctatcatgtga |
224 |
Q |
| |
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|| |||| | |||||||||| |
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| T |
10922186 |
aagatacatcttatcatgtga |
10922166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 10905683 - 10905593
Alignment:
| Q |
134 |
gaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaataggtacaacctatcatgtga |
224 |
Q |
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| T |
10905683 |
gaaggtgcggtgtccatagcatcagccaccctttccggttgaatgacagtcccaaacactgtggtgacaaaaggtacatcttatcatgtga |
10905593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 10975777 - 10975692
Alignment:
| Q |
104 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaa |
189 |
Q |
| |
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||||||||||||| || ||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10975777 |
atggtgatgaacaccatgagtcatgttctggaagttgcggtgtccataacatcagccaccctttccggctgaaagacagtcccaaa |
10975692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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