View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0788_low_21 (Length: 268)
Name: NF0788_low_21
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0788_low_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 14357386 - 14357249
Alignment:
| Q |
1 |
caccaccatcgccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcatttcttaacccaattgcacttcagttcataatca |
100 |
Q |
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| T |
14357386 |
caccaccatcgccatcagtagttggaacttcttcaactgggtgaattgaagcatggctcaccttcatttcttaacccaattgcacttcaattcataatca |
14357287 |
T |
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| Q |
101 |
cacactacccaactttttcttcttcgccaaatctaatc |
138 |
Q |
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| T |
14357286 |
cacactacccaactttttcttcttcaccaaatctaatc |
14357249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 29657613 - 29657747
Alignment:
| Q |
4 |
caccatcgccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcatttcttaacccaattgcacttcagttcataatcacac |
103 |
Q |
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| T |
29657613 |
caccatcaccatcagtagttggaacttcttcaatttggtgaattgaagcatggctcacattcatttcttaacccaatttcacttcaattcataatcacac |
29657712 |
T |
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| Q |
104 |
actacccaactttttcttcttcgccaaatctaatc |
138 |
Q |
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| T |
29657713 |
atcacccaactttttcttcttcaccaaatctaatc |
29657747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 21731117 - 21731006
Alignment:
| Q |
12 |
ccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcatttcttaacccaattgcacttcagttcataatcacacactaccca |
111 |
Q |
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| T |
21731117 |
ccatcagtagttggaacttcttcaactgggtgaattgaagcatggctcacgttcatttcttcacccaattacacttcaattcataatcacacaccaccca |
21731018 |
T |
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| Q |
112 |
actttttcttct |
123 |
Q |
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| T |
21731017 |
actttttcttct |
21731006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 5547328 - 5547454
Alignment:
| Q |
12 |
ccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcatttcttaacccaattgcacttcagttcataatcacacactaccca |
111 |
Q |
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|||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| || | ||||| |
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| T |
5547328 |
ccatcaatagttcgaactttttcaactggatgaattgaagcatggctcacgttcatttcttcatccaattgcacttcaattcataatctcatgccaccca |
5547427 |
T |
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| Q |
112 |
actttttcttcttcgccaaatctaatc |
138 |
Q |
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| T |
5547428 |
actttttcttcttcaccaaatctaatc |
5547454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 14459176 - 14459135
Alignment:
| Q |
227 |
ggtatttactgcattgaattattcctaagtttatatatccta |
268 |
Q |
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| T |
14459176 |
ggtaattactgcattgaattattcctaagtttatatatccta |
14459135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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