View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0788_low_23 (Length: 255)
Name: NF0788_low_23
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0788_low_23 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 83 - 255
Target Start/End: Complemental strand, 26586113 - 26585941
Alignment:
| Q |
83 |
ttatctcgaattccaattgatacacgtaaagtttaaaggttgcaccaaataaaatacattgaataacatatggatgaatggttttgagtaagaatcaaga |
182 |
Q |
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| T |
26586113 |
ttatctcgaattccaattgatacacgtaaagtttaaaggttgcaccaaataaaatacattgaataacatatgaatgaatggttttgagtaagaatcaaga |
26586014 |
T |
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| Q |
183 |
tgaatttattttcataaatcaaaaagaggtatgccgaaacctcaagaatcatacatggagtataagtaaatca |
255 |
Q |
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| T |
26586013 |
tgaatttattttcataaatcaaaaagaggtatgttgaaaccttgagaatcatacatggagtataagtaaatca |
26585941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 108 - 253
Target Start/End: Original strand, 26925550 - 26925698
Alignment:
| Q |
108 |
gtaaagtttaaaggttgcaccaaataaaatacattgaataacatatggatgaatggttttgagtaagaatcaagatgaatttatt---ttcataaatc-a |
203 |
Q |
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| T |
26925550 |
gtaaaattcaaaggttgcaccaaataaaatacattgaataagatatggatgaatggttttgagttataatcaagat-aatttcttttcttcataaatcta |
26925648 |
T |
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| Q |
204 |
aaaagaggtatgccgaaacctcaagaatcatacatggagtataagtaaat |
253 |
Q |
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| T |
26925649 |
aacagaggtatgctgaaacctcaagaatcatacatggagtataagtaaat |
26925698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 19828937 - 19828804
Alignment:
| Q |
98 |
attgatacacgtaaagtttaaaggttgcaccaaataaaatacattgaataacatatggatgaatggttttgagtaagaatcaagatgaatttattttcat |
197 |
Q |
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| T |
19828937 |
attgatacacataaaattccaaggtttcaccaaataaaatacatcgaataacatatggatgaatggttttgagtaggaatcaagatgaattttatttcat |
19828838 |
T |
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| Q |
198 |
aaatcaaa-aagaggtatgccgaaacctcaagaa |
230 |
Q |
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| T |
19828837 |
aaatcaaagcaggggtatgctgaaacctcaagaa |
19828804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 8288830 - 8288742
Alignment:
| Q |
142 |
tgaataacatatggatgaatggttttgagtaagaatcaagatgaatttattttcataaatcaaaaagaggtatgccgaaacctcaagaa |
230 |
Q |
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| T |
8288830 |
tgaataacatatggatgaatggttttgagtaagaatcaagataatctttttttcatagatcaaaaagaggtatgctgaaatctcaagaa |
8288742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 27058037 - 27058085
Alignment:
| Q |
79 |
atctttatctcgaattccaattgatacacgtaaagtttaaaggttgcacc |
128 |
Q |
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| T |
27058037 |
atctttgtctcgaatttcaattgatacacataaagttt-aaggttgcacc |
27058085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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