View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0788_low_26 (Length: 251)

Name: NF0788_low_26
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0788_low_26
NF0788_low_26
[»] chr7 (4 HSPs)
chr7 (6-232)||(21930652-21930879)
chr7 (141-228)||(24339670-24339757)
chr7 (141-228)||(2334278-2334364)
chr7 (192-228)||(27945069-27945105)
[»] chr1 (8 HSPs)
chr1 (126-228)||(31694639-31694741)
chr1 (126-226)||(40917779-40917879)
chr1 (124-228)||(47989525-47989629)
chr1 (141-228)||(5944311-5944398)
chr1 (123-179)||(22515824-22515880)
chr1 (126-179)||(18471361-18471414)
chr1 (126-175)||(21365992-21366041)
chr1 (126-179)||(51410091-51410144)
[»] chr5 (6 HSPs)
chr5 (125-228)||(39698569-39698672)
chr5 (149-228)||(21542058-21542137)
chr5 (126-169)||(131824-131867)
chr5 (149-228)||(21522778-21522857)
chr5 (149-228)||(21533344-21533423)
chr5 (126-182)||(42893423-42893479)
[»] chr2 (7 HSPs)
chr2 (126-228)||(35056896-35056998)
chr2 (149-228)||(36756296-36756375)
chr2 (126-228)||(12668352-12668454)
chr2 (126-226)||(37419773-37419873)
chr2 (126-176)||(29176368-29176418)
chr2 (135-228)||(28524454-28524547)
chr2 (126-170)||(44635568-44635612)
[»] chr3 (3 HSPs)
chr3 (128-228)||(4987222-4987322)
chr3 (149-228)||(15796246-15796325)
chr3 (126-179)||(55401141-55401194)
[»] chr6 (7 HSPs)
chr6 (149-228)||(16766725-16766804)
chr6 (149-228)||(9522919-9522998)
chr6 (126-228)||(8365448-8365550)
chr6 (141-226)||(9107314-9107399)
chr6 (127-228)||(31384948-31385048)
chr6 (191-228)||(10770668-10770705)
chr6 (192-228)||(9911523-9911559)
[»] chr8 (5 HSPs)
chr8 (146-215)||(29655927-29655996)
chr8 (126-228)||(15816058-15816160)
chr8 (126-228)||(22652004-22652106)
chr8 (124-180)||(4498368-4498424)
chr8 (126-226)||(29510233-29510333)
[»] scaffold0136 (1 HSPs)
scaffold0136 (126-228)||(3778-3880)
[»] scaffold0053 (1 HSPs)
scaffold0053 (126-179)||(8864-8917)
[»] chr4 (7 HSPs)
chr4 (141-206)||(15724498-15724563)
chr4 (145-225)||(19312366-19312446)
chr4 (126-172)||(12047339-12047385)
chr4 (143-228)||(27706123-27706208)
chr4 (128-228)||(28000672-28000773)
chr4 (123-179)||(28964185-28964241)
chr4 (143-179)||(34306761-34306797)
[»] scaffold0003 (1 HSPs)
scaffold0003 (126-228)||(241622-241724)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 21930879 - 21930652
Alignment:
Q  6 agtgagatgaaaacaggtacaatctgtcacaacaattagtggtgcagcttaactaagtgaacagnnnnnnngtgtagtatctgattcattctgtttag-n 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||      
T  21930879 agtgaaatgaaaacaggtacaatctgtcacaacaattagtggtgcagcttaactaagtgaacagaaaaaaagtgcagtatctgattcattctgtttagaa 21930780  T
Q  105 nnnnnnnnnnnncattaataactatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccg 204  Q
                ||||||||||||||||| |||||  ||| || ||||||| ||||| ||| |||||| |||| |||| |||| ||||||||||||| ||    
T  21930779 aaagaaaaaaaacattaataactatgaagcatggactctcttcggattaggtgtgttccggcgtcggacacgtcttgtgtccaacactgacacgacatcg 21930680  T
Q  205 acactggtaatcacactgaattatctaa 232  Q
    ||||| ||||| | | ||||||||||||    
T  21930679 acacttgtaattaaaatgaattatctaa 21930652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 24339757 - 24339670
Alignment:
Q  141 actcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||| ||||||||||||  ||||||||||||||||| || |||  ||| ||||||||||||||||| ||||| ||||||||||||    
T  24339757 actcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattat 24339670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 2334364 - 2334278
Alignment:
Q  141 actcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||| |||||| |||||||| |||||||| | |||| || |||  ||| ||||||||||||||||| ||||| ||||| ||||||    
T  2334364 actcctcggattagacgtgtttcagtgtcggacatgtgtcgtgtccgacac-gacacgacaccgacacttgtaattacactaaattat 2334278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 27945105 - 27945069
Alignment:
Q  192 tgacacgacaccgacactggtaatcacactgaattat 228  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  27945105 tgacacgacaccgacacttgtaattacactgaattat 27945069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 31694639 - 31694741
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| ||||||||||||||||||||| |||||||| ||| ||||||| |||  ||| ||||||||||||||||| ||||| | |||||||    
T  31694639 ctatgaagcacggacactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaat 31694738  T
Q  226 tat 228  Q
    |||    
T  31694739 tat 31694741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 40917879 - 40917779
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| | ||||| ||||||||||||  |||||||||| |||||| || |||| ||| ||||||||||||| ||| ||||| ||||| |||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccgagacttgtaattacacttaat 40917780  T
Q  226 t 226  Q
    |    
T  40917779 t 40917779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 47989629 - 47989525
Alignment:
Q  124 aactatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactga 223  Q
    |||||||||| | ||| ||||||| ||||||||||||  || |||| || | |||| || |||  ||| ||||||||||||||||| ||||| |||||||    
T  47989629 aactatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactga 47989530  T
Q  224 attat 228  Q
    |||||    
T  47989529 attat 47989525  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 5944398 - 5944311
Alignment:
Q  141 actcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||| |||||||||| |  |||||||||| | ||||||| ||| |||  |||||||||||||||||  |||| ||||||||||||    
T  5944398 actcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaattat 5944311  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 22515824 - 22515880
Alignment:
Q  123 taactatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgt 179  Q
    ||||||||||| | ||| ||||||| |||||||||||| ||||||||||||| ||||    
T  22515824 taactatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgt 22515880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 18471414 - 18471361
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgt 179  Q
    |||||||||| ||| |||||||  |||||| |||||||||||||||| ||||||    
T  18471414 ctatgaagtacggacactcctcgaattaggtgtgtttcggtgtcggacacgtgt 18471361  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 21365992 - 21366041
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatac 175  Q
    |||||||| | ||| ||||||| |||||||||||| ||||||||||||||    
T  21365992 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatac 21366041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 51410144 - 51410091
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgt 179  Q
    |||||||| | | ||||||||  |||||||||||| ||||||||||||||||||    
T  51410144 ctatgaagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgt 51410091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 39698672 - 39698569
Alignment:
Q  125 actatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaa 224  Q
    ||||||||| | ||| ||||||| |||||||||||| |||||||||||||| ||| || |||  ||| |||||||||| |||||| ||||| ||||||||    
T  39698672 actatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaa 39698573  T
Q  225 ttat 228  Q
    ||||    
T  39698572 ttat 39698569  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 21542137 - 21542058
Alignment:
Q  149 gattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    |||| |||||||  |||||||||| |||||| || |||  ||| ||||||||||||||||| ||||| ||||||||||||    
T  21542137 gattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattat 21542058  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 131867 - 131824
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtc 169  Q
    |||||||||||||| |||||| ||||||||| ||||||||||||    
T  131867 ctatgaagtatggacactccttagattaggcatgtttcggtgtc 131824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 21522857 - 21522778
Alignment:
Q  149 gattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||||||||  ||||| |||| |||||| || |||  ||| ||||||||||||||| | ||||| ||||||||||||    
T  21522857 gattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattat 21522778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 21533423 - 21533344
Alignment:
Q  149 gattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||||||||  ||||| |||| |||||| || |||  ||| ||||||||||||||| | ||||| ||||||||||||    
T  21533423 gattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattat 21533344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 42893479 - 42893423
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgt 182  Q
    |||||||| ||||| |||||||| |||||||||||   ||||||||| |||||||||    
T  42893479 ctatgaagcatggacactcctcatattaggcgtgtcctggtgtcggacacgtgttgt 42893423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 35056998 - 35056896
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| ||||||||||||||||||||||| |||||||| |||||| || |||  ||| ||||||||||||||||   |||| |||||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaat 35056899  T
Q  226 tat 228  Q
    |||    
T  35056898 tat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 36756296 - 36756375
Alignment:
Q  149 gattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||||||||| |||||||||| | ||||||| | |  |||| ||||||||||||||||  |||| ||||||||||||    
T  36756296 gattaggcgtgttgcggtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaattat 36756375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 12668352 - 12668454
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | |||||||||||  |||||| ||||  |  |||| ||||||||| |||||||  || |||||||||||||||||  |||| |||||||||    
T  12668352 ctatgaagcacggatactcctcgaattaggtgtgtcccaatgtcagatacgtgtcgtatccaataccgacacgacaccgacacttataattacactgaat 12668451  T
Q  226 tat 228  Q
    |||    
T  12668452 tat 12668454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 37419873 - 37419773
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| ||||||| ||||||||||||  |||||||||| |||  | || |||  ||| |||||||||||| |||| ||||| |||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaat 37419774  T
Q  226 t 226  Q
    |    
T  37419773 t 37419773  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 29176368 - 29176418
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacg 176  Q
    |||||||| ||| | ||| ||| ||||||||||||||||||||||||||||    
T  29176368 ctatgaagcatgaacacttctcggattaggcgtgtttcggtgtcggatacg 29176418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 28524547 - 28524454
Alignment:
Q  135 atggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||| ||| ||||||||||||||||||| ||||| || ||||||||| |||  |||  |||| ||| ||||||   |||| ||||||||||||    
T  28524547 atggacacttctcagattaggcgtgtttctgtgtcagacacgtgttgtgtccgacaccaacacaacaacgacacatataattacactgaattat 28524454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 44635612 - 44635568
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcg 170  Q
    |||||||| | ||| |||||||||||||||||||| |||||||||    
T  44635612 ctatgaagcacggacactcctcagattaggcgtgtctcggtgtcg 44635568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 4987222 - 4987322
Alignment:
Q  128 atgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaatta 227  Q
    |||||||| ||| ||||||| ||||||||||||  |||||||||| |||||| || |||| ||| |||||| |||| ||||| ||||| |||||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaatta 4987321  T
Q  228 t 228  Q
    |    
T  4987322 t 4987322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 15796246 - 15796325
Alignment:
Q  149 gattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||||||||| |||||| ||| ||||||||| |||  |||  |||||||||||||| | ||||| ||||||||||||    
T  15796246 gattaggcgtgttccggtgttggacacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaattat 15796325  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 55401194 - 55401141
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgt 179  Q
    |||||||| | ||| ||||||| |||||||||||| ||||||||||| ||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgt 55401141  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 16766804 - 16766725
Alignment:
Q  149 gattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||||||||  |||||||||| ||||||||| |||  ||| ||||||||||||||||| ||||| ||||||||||||    
T  16766804 gattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattat 16766725  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 9522998 - 9522919
Alignment:
Q  149 gattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    |||||||||||| ||||||||||| |||||| | ||||  ||| ||||| ||||||||||| ||||| ||||||||||||    
T  9522998 gattaggcgtgtctcggtgtcggacacgtgtcggatccgacaccgacacaacaccgacacttgtaattacactgaattat 9522919  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 8365448 - 8365550
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| ||||||| ||||||||||||  | |||||||| |||||| || |||   || ||||||||||||||||| ||||| |||| ||||    
T  8365448 ctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaat 8365547  T
Q  226 tat 228  Q
    |||    
T  8365548 tat 8365550  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 9107314 - 9107399
Alignment:
Q  141 actcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaatt 226  Q
    ||||||| ||||||| ||||  |||||||||| ||  ||||| |||  ||| ||||||||||||||||| ||||| ||||||||||    
T  9107314 actcctcggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 9107399  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 31385048 - 31384948
Alignment:
Q  127 tatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaatt 226  Q
    ||||||| | ||| ||||||  ||||||||||||  |||||| ||| |||||| || |||| |||| ||||||||| |||||| ||||| ||||||||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgtccaacact-acacgacactgacacttgtaattacactgaatt 31384950  T
Q  227 at 228  Q
    ||    
T  31384949 at 31384948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 10770668 - 10770705
Alignment:
Q  191 ctgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  10770668 ctgacacgacaccgacacttgtaattacactgaattat 10770705  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 9911523 - 9911559
Alignment:
Q  192 tgacacgacaccgacactggtaatcacactgaattat 228  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  9911523 tgacacgacaccgacacttgtaattacactgaattat 9911559  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 29655927 - 29655996
Alignment:
Q  146 tcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaat 215  Q
    |||||||||||||||||||||||| |||| ||||||| |||  |||||||||||| || ||||| |||||    
T  29655927 tcagattaggcgtgtttcggtgtcagatatgtgttgtgtccgacactgacacgacgcctacacttgtaat 29655996  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 15816058 - 15816160
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| ||| ||| ||||||||||||  ||||||||||| ||||| || |||  |||  ||||||||||||||||  |||| ||||| |||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaat 15816157  T
Q  226 tat 228  Q
    |||    
T  15816158 tat 15816160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 22652106 - 22652004
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| ||||||| |||||| |||||  |||||||||| || ||| || |||  ||| ||||||||||||||||| ||||| | | |||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaat 22652007  T
Q  226 tat 228  Q
    |||    
T  22652006 tat 22652004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 4498424 - 4498368
Alignment:
Q  124 aactatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgtt 180  Q
    ||||| |||| | ||| ||||||| ||||||| ||||||||||||||||||| ||||    
T  4498424 aactaagaagcacggacactcctctgattaggtgtgtttcggtgtcggatacatgtt 4498368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 29510233 - 29510333
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| ||||||| ||||||| ||||  |||||||||| ||| || || |||  ||| ||||| ||||||||||| ||||| | |||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaat 29510332  T
Q  226 t 226  Q
    |    
T  29510333 t 29510333  T

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Target: scaffold0136 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 3778 - 3880
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| ||||||| |||||||||||| ||| ||||||| | |||| || |||  |||  ||||||||| |||||| ||||| |||||||||    
T  3778 ctatgaagcaaggacactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaat 3877  T
Q  226 tat 228  Q
    |||    
T  3878 tat 3880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 8917 - 8864
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgt 179  Q
    |||||||| | ||| |||||||||||||||||||| ||||||||||| ||||||    
T  8917 ctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgt 8864  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 15724498 - 15724563
Alignment:
Q  141 actcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgac 206  Q
    ||||||| |||||||||||||| |||||| || ||||||||| |||  ||| ||||||||||||||    
T  15724498 actcctcggattaggcgtgttttggtgtctgacacgtgttgtgtccgacaccgacacgacaccgac 15724563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 19312446 - 19312366
Alignment:
Q  145 ctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||||| ||||| ||||||||||| |||||| ||||||  ||  ||||||||||||| |||  |||| |||||||||    
T  19312446 ctcagattagacgtgtctcggtgtcggacacgtgtcgtatccgacaacgacacgacaccgatacttataattacactgaat 19312366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 12047339 - 12047385
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcgga 172  Q
    |||||||| |||||| |||||| |||||||||||||| |||||||||    
T  12047339 ctatgaagcatggatgctcctcggattaggcgtgttttggtgtcgga 12047385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 27706123 - 27706208
Alignment:
Q  143 tcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaattat 228  Q
    ||||||||||||||||||  |||| |||||||||||| || |||  || | |||||||||  ||||| ||||| ||||| ||||||    
T  27706123 tcctcagattaggcgtgtcccggtatcggatacgtgtcgtgtccgacattaacacgacactcacacttgtaattacactaaattat 27706208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 28000672 - 28000773
Alignment:
Q  128 atgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcact-gacacgacaccgacactggtaatcacactgaatt 226  Q
    |||||| | ||| |||| |||||||||| |||| |||||||| || |||||| ||   || |||| |||| |||||||||||| ||||| ||||||||||    
T  28000672 atgaagcacggacactcatcagattaggtgtgtctcggtgtcagacacgtgtcgtgaacaacacttgacatgacaccgacacttgtaattacactgaatt 28000771  T
Q  227 at 228  Q
    ||    
T  28000772 at 28000773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 28964185 - 28964241
Alignment:
Q  123 taactatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgt 179  Q
    ||||||||||| ||||| ||||||| ||||||||||||  | |||||||||| ||||    
T  28964185 taactatgaagcatggacactcctcggattaggcgtgtcccagtgtcggatatgtgt 28964241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 34306761 - 34306797
Alignment:
Q  143 tcctcagattaggcgtgtttcggtgtcggatacgtgt 179  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  34306761 tcctcagattaggcgtgtctcggtgtcggacacgtgt 34306797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 241724 - 241622
Alignment:
Q  126 ctatgaagtatggatactcctcagattaggcgtgtttcggtgtcggatacgtgttgtatccatcactgacacgacaccgacactggtaatcacactgaat 225  Q
    |||||||| | ||| ||| ||| ||||||||||||  |||||||||| |||||| || |||  |||  ||||||||||||||||  |||| ||||| |||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaat 241625  T
Q  226 tat 228  Q
    |||    
T  241624 tat 241622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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