View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0788_low_3 (Length: 453)

Name: NF0788_low_3
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0788_low_3
NF0788_low_3
[»] chr3 (10 HSPs)
chr3 (20-340)||(8070888-8071208)
chr3 (166-413)||(8039555-8039812)
chr3 (333-443)||(8069494-8069604)
chr3 (37-136)||(8039916-8040016)
chr3 (164-201)||(5407212-5407249)
chr3 (166-214)||(28812597-28812645)
chr3 (164-214)||(7171570-7171620)
chr3 (163-201)||(25775575-25775613)
chr3 (164-201)||(15999963-16000000)
chr3 (165-201)||(1389908-1389944)
[»] chr1 (6 HSPs)
chr1 (164-206)||(16164252-16164294)
chr1 (165-201)||(6612113-6612149)
chr1 (164-214)||(9690213-9690263)
chr1 (164-212)||(1486646-1486694)
chr1 (165-201)||(16297234-16297270)
chr1 (164-216)||(18190046-18190098)
[»] scaffold0022 (1 HSPs)
scaffold0022 (164-215)||(90912-90963)
[»] chr8 (5 HSPs)
chr8 (164-214)||(8343396-8343446)
chr8 (164-214)||(36450694-36450744)
chr8 (165-214)||(8343037-8343086)
chr8 (170-214)||(13436910-13436954)
chr8 (166-194)||(31557067-31557095)
[»] chr4 (5 HSPs)
chr4 (164-201)||(30982820-30982857)
chr4 (166-214)||(17876237-17876285)
chr4 (164-207)||(35952568-35952611)
chr4 (164-216)||(23292924-23292976)
chr4 (166-214)||(47264068-47264116)
[»] chr6 (5 HSPs)
chr6 (163-214)||(9027235-9027286)
chr6 (164-215)||(24645550-24645601)
chr6 (117-161)||(10760884-10760928)
chr6 (165-201)||(21395266-21395302)
chr6 (164-192)||(34172257-34172285)
[»] chr2 (1 HSPs)
chr2 (127-162)||(10547972-10548007)
[»] chr7 (3 HSPs)
chr7 (164-206)||(3294252-3294294)
chr7 (164-214)||(9778574-9778624)
chr7 (170-214)||(5307331-5307375)
[»] chr5 (2 HSPs)
chr5 (164-214)||(21522830-21522880)
chr5 (164-214)||(21533396-21533446)
[»] scaffold0020 (1 HSPs)
scaffold0020 (163-191)||(135286-135314)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 8071208 - 8070888
Alignment:
Q  20 tggattagataaacaaagatacaatttacatgactttttcttgattattactcaaaaaggatatagcagaagagttgtacaataaaaatgatatgcaatc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8071208 tggattagataaacaaagatacaatttacatgactttttcttgattattactcaaaaaggatatagcagaagagttgtacaataaaaatgatgtgcaatc 8071109  T
Q  120 tatgaaccacggacactgacacgtcgacgccgttaataatttatcgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagtgtgc 219  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8071108 tatgaaccacggacactgatacgtcgacaccgttaataatttatcgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagtgtgc 8071009  T
Q  220 aattaaataacatcatttattataatataagactatcaataaaggtttcctattgaaaaacctattaaggtactcttcatgtgtcatgttcttgtatact 319  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8071008 aattaaataacatcatttatcataatctaagactatcaataaaggtttcctattgaaaaacctattaaagtactcttcatgtgtcatgttcttgtatact 8070909  T
Q  320 tgctggtttccttcaccaatt 340  Q
    |||||||||||||||||||||    
T  8070908 tgctggtttccttcaccaatt 8070888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 166 - 413
Target Start/End: Complemental strand, 8039812 - 8039555
Alignment:
Q  166 tgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagtgtgcaattaaataacatcatttattataatataagactatcaataaaggt 265  Q
    ||||||||||| |||||||| |||||| |||||| | ||||| |||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||     
T  8039812 tgtccgacaccgggacacgcttaatccgaagagtatctgtgcttcatagtgtgcaattaaacaacatcatttatcataatctaatactatcaataaagga 8039713  T
Q  266 ttc----------ctattgaaaaacctattaaggtactcttcatgtgtcatgttcttgtatacttgctggtttccttcaccaattaacttcttagcaggt 355  Q
    |||          ||||||||||| |||| ||  |||||  ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||    
T  8039712 ttcatcaagcttcctattgaaaaatctatcaaaatactcagcatgtgtcatgttcttgtatacttgttggtttccttcaacaattaatttcttagcaggt 8039613  T
Q  356 gcaatgtcaatagaaggggttggataacaaaatgttactattgtcaatctttccttca 413  Q
    |||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  8039612 gcaatgtccatagaagggcttggatagcaaaatgtcactattgtcaatctttccttca 8039555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 333 - 443
Target Start/End: Complemental strand, 8069604 - 8069494
Alignment:
Q  333 caccaattaacttcttagcaggtgcaatgtcaatagaaggggttggataacaaaatgttactattgtcaatctttccttcaaggcttcaacttatttact 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8069604 caccaattaacttcttagcaggtgcaatgtcaatagaaggggttggataacaaaatgttactattgtcaatctttccttcaaggcttcaacttatttact 8069505  T
Q  433 acagctctgtg 443  Q
    |||||||||||    
T  8069504 acagctctgtg 8069494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 8040016 - 8039916
Alignment:
Q  37 gatacaatttacatgactttttcttgattattactcaaaaaggatatagcagaagagttgt-acaataaaaatgatatgcaatctatgaaccacggacac 135  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| || | |||||||||||| ||||||||||||| ||| |||||    
T  8040016 gatacaatttacatgactttttcttgattaatattcaaaaaggatatagcagaagagtggtaaaaataaaaatgatgtgcaatctatgaagcacagacac 8039917  T
Q  136 t 136  Q
    |    
T  8039916 t 8039916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 5407249 - 5407212
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgt 201  Q
    |||||||||| |||||||||||||||||||||||||||    
T  5407249 cgtgtccgacgccaggacacgcctaatccaaagagtgt 5407212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 28812597 - 28812645
Alignment:
Q  166 tgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    ||||||||| ||||||||||||||||| | |||||| ||||||||||||    
T  28812597 tgtccgacagcaggacacgcctaatccgaggagtgtctgtgcctcatag 28812645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 7171570 - 7171620
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    |||||||||||||  |||||||||||||||| |||||||| ||| ||||||    
T  7171570 cgtgtccgacaccgcgacacgcctaatccaaggagtgtatatgcttcatag 7171620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 25775575 - 25775613
Alignment:
Q  163 tcgtgtccgacaccaggacacgcctaatccaaagagtgt 201  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  25775575 tcgtgtccgacaccaggacacgcctaatccgaggagtgt 25775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 16000000 - 15999963
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgt 201  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  16000000 cgtgtccgacaccgggacacgcctaatccaaggagtgt 15999963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 1389908 - 1389944
Alignment:
Q  165 gtgtccgacaccaggacacgcctaatccaaagagtgt 201  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  1389908 gtgtccgacaccaggacatgcctaatccaaggagtgt 1389944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 16164294 - 16164252
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtg 206  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  16164294 cgtgtccgacaccaggacacgcctaatccgaagagtgtatgtg 16164252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 6612149 - 6612113
Alignment:
Q  165 gtgtccgacaccaggacacgcctaatccaaagagtgt 201  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6612149 gtgtccgacaccaggacacgcctaatccaaggagtgt 6612113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 9690263 - 9690213
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    ||||||||||||| |||||||||||||||  ||||||| ||||| ||||||    
T  9690263 cgtgtccgacaccgggacacgcctaatccggagagtgtttgtgcttcatag 9690213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 1486694 - 1486646
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcat 212  Q
    ||||||||||||| ||||||||||||||| | |||||| ||||| ||||    
T  1486694 cgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 16297270 - 16297234
Alignment:
Q  165 gtgtccgacaccaggacacgcctaatccaaagagtgt 201  Q
    |||||||||||||||||||||||||||| | ||||||    
T  16297270 gtgtccgacaccaggacacgcctaatccgaggagtgt 16297234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 18190098 - 18190046
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagtg 216  Q
    ||||||||||||| |||||| |||||||| | ||||||||| || ||||||||    
T  18190098 cgtgtccgacaccgggacacacctaatccgaggagtgtatgcgcttcatagtg 18190046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 90912 - 90963
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagt 215  Q
    ||||||||||||||  ||||||||||||||| |||||||||||| |||||||    
T  90912 cgtgtccgacaccaaaacacgcctaatccaatgagtgtatgtgcttcatagt 90963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 8343396 - 8343446
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||| ||||||    
T  8343396 cgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 36450744 - 36450694
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    ||||||||||||||||||||||||||||| | |||||| ||||| ||||||    
T  36450744 cgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 8343037 - 8343086
Alignment:
Q  165 gtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    |||||||||||| ||||||||||||||| |||||||| ||||| ||||||    
T  8343037 gtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 13436954 - 13436910
Alignment:
Q  170 cgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    ||||||| ||||||||||||||||| |||||| ||||| ||||||    
T  13436954 cgacaccgggacacgcctaatccaaggagtgtctgtgcttcatag 13436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 31557067 - 31557095
Alignment:
Q  166 tgtccgacaccaggacacgcctaatccaa 194  Q
    |||||||||||||||||||||||||||||    
T  31557067 tgtccgacaccaggacacgcctaatccaa 31557095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 30982857 - 30982820
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgt 201  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  30982857 cgtgtccgacaccgggacacgcctaatccaaagagtgt 30982820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 17876237 - 17876285
Alignment:
Q  166 tgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    |||||||||||||||||| |||||||||| |||||| ||||| ||||||    
T  17876237 tgtccgacaccaggacacacctaatccaaggagtgtctgtgcttcatag 17876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 35952611 - 35952568
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgc 207  Q
    |||||||||||||| |||||| ||||||||| ||||||||||||    
T  35952611 cgtgtccgacaccaagacacgtctaatccaatgagtgtatgtgc 35952568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 23292976 - 23292924
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagtg 216  Q
    ||||||||||||| ||||||||||||||| | ||||||  |||| ||||||||    
T  23292976 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagtg 23292924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 47264068 - 47264116
Alignment:
Q  166 tgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    |||| |||||||||||||||||||||| ||||| || ||||| ||||||    
T  47264068 tgtctgacaccaggacacgcctaatccgaagagcgtctgtgcttcatag 47264116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 9027235 - 9027286
Alignment:
Q  163 tcgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    |||||||||||||| ||||||| ||||||||| |||||| ||||| ||||||    
T  9027235 tcgtgtccgacaccgggacacggctaatccaaggagtgtttgtgcttcatag 9027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 24645550 - 24645601
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatagt 215  Q
    |||||||||||||| |||||| ||||||| |||||||| ||||| |||||||    
T  24645550 cgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcatagt 24645601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 10760928 - 10760884
Alignment:
Q  117 atctatgaaccacggacactgacacgtcgacgccgttaataattt 161  Q
    ||||||||| ||||||||||||||||||||| | | |||||||||    
T  10760928 atctatgaagcacggacactgacacgtcgacactgataataattt 10760884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 21395302 - 21395266
Alignment:
Q  165 gtgtccgacaccaggacacgcctaatccaaagagtgt 201  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  21395302 gtgtcggacaccaggacacgcctaatccaaggagtgt 21395266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 34172257 - 34172285
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatcc 192  Q
    |||||||||||||||||||||||||||||    
T  34172257 cgtgtccgacaccaggacacgcctaatcc 34172285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 10548007 - 10547972
Alignment:
Q  127 cacggacactgacacgtcgacgccgttaataattta 162  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10548007 cacggacactgacacgtcgacaccgttaataattta 10547972  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 3294294 - 3294252
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtg 206  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||    
T  3294294 cgtgtccaacaccgggacacgcctaatccgaagagtgtatgtg 3294252  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 9778574 - 9778624
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    ||||||||||||| ||||||||||||||||| ||||||  |||| ||||||    
T  9778574 cgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 5307331 - 5307375
Alignment:
Q  170 cgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    |||||| |||||||||||||||||| ||||||| |||| ||||||    
T  5307331 cgacactaggacacgcctaatccaaggagtgtacgtgcttcatag 5307375  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 21522830 - 21522880
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    |||||||| |||| ||||||||||||||||||||||||  |||| ||||||    
T  21522830 cgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21522880  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 21533396 - 21533446
Alignment:
Q  164 cgtgtccgacaccaggacacgcctaatccaaagagtgtatgtgcctcatag 214  Q
    |||||||| |||| ||||||||||||||||||||||||  |||| ||||||    
T  21533396 cgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21533446  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 135314 - 135286
Alignment:
Q  163 tcgtgtccgacaccaggacacgcctaatc 191  Q
    |||||||||||||||||||||||||||||    
T  135314 tcgtgtccgacaccaggacacgcctaatc 135286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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