View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0788_low_33 (Length: 205)

Name: NF0788_low_33
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0788_low_33
NF0788_low_33
[»] chr1 (2 HSPs)
chr1 (1-101)||(23805397-23805497)
chr1 (14-60)||(32359164-32359210)
[»] chr2 (1 HSPs)
chr2 (120-180)||(14459311-14459371)
[»] chr4 (2 HSPs)
chr4 (11-92)||(52831434-52831515)
chr4 (16-92)||(39276339-39276415)
[»] chr8 (1 HSPs)
chr8 (11-62)||(25019672-25019723)
[»] chr5 (1 HSPs)
chr5 (25-92)||(9004814-9004881)
[»] chr7 (2 HSPs)
chr7 (24-90)||(883733-883799)
chr7 (24-90)||(1243062-1243128)
[»] chr3 (1 HSPs)
chr3 (19-92)||(43822515-43822588)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 23805397 - 23805497
Alignment:
Q  1 aaaaacagagttggcaactgtcgtttttacacgagattataacttatttttatgagcttataatagtttttcataagatgattcaagtagctacatttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  23805397 aaaaacagagttggcaactgtcgtttttacacgagattataacttatttttatgagcttataatagtttttcagaagatgattcaagtagctatatttat 23805496  T
Q  101 a 101  Q
    |    
T  23805497 a 23805497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 32359164 - 32359210
Alignment:
Q  14 gcaactgtcgtttttacacgagattataacttatttttatgagctta 60  Q
    ||||||||| |||||||||||| ||||| |||||||| |||||||||    
T  32359164 gcaactgtcatttttacacgagcttatagcttattttcatgagctta 32359210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 14459311 - 14459371
Alignment:
Q  120 ccttatatgattctctgacttgtagaattttgcatagtagaaaaattgtacttcacctatg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14459311 ccttatatgattctctgacttgtagaattttgcatagtagaaaaattgtacttcacctatg 14459371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 52831434 - 52831515
Alignment:
Q  11 ttggcaactgtcgtttttacacgagattataacttatttttatgagcttataatagtttttcataagatgattcaagtagct 92  Q
    |||| ||| ||| |||||||||||| || || |||||||| ||||||||||||  |||||| ||||| | ||||||||||||    
T  52831434 ttggtaacggtcatttttacacgagcttgtagcttattttcatgagcttataaaggtttttgataagctaattcaagtagct 52831515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 39276339 - 39276415
Alignment:
Q  16 aactgtcgtttttacacgagattataacttatttttatgagcttataatagtttttcataagatgattcaagtagct 92  Q
    ||||||| ||||  |||||| ||||||||||||||||  |||||||||   ||||| ||||| | ||||||||||||    
T  39276339 aactgtcattttctcacgagcttataacttatttttactagcttataacgttttttgataagctaattcaagtagct 39276415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 25019723 - 25019672
Alignment:
Q  11 ttggcaactgtcgtttttacacgagattataacttatttttatgagcttata 62  Q
    |||| ||||||  |||||| ||||||||||||||| ||||||||||||||||    
T  25019723 ttggtaactgttatttttaaacgagattataacttctttttatgagcttata 25019672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 9004814 - 9004881
Alignment:
Q  25 ttttacacgagattataacttatttttatgagcttataatagtttttcataagatgattcaagtagct 92  Q
    ||||||||||| ||||| |||||||| |||||||||||   |||||| ||||| | ||||||||||||    
T  9004814 ttttacacgagcttatagcttattttcatgagcttatatcggtttttgataagctaattcaagtagct 9004881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 883733 - 883799
Alignment:
Q  24 tttttacacgagattataacttatttttatgagcttataatagtttttcataagatgattcaagtag 90  Q
    |||||||||||| |||||||||||||| |||||| ||||  ||||| | ||||| | ||||||||||    
T  883733 tttttacacgagcttataacttattttcatgagcatatagaagtttctgataagttaattcaagtag 883799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 1243062 - 1243128
Alignment:
Q  24 tttttacacgagattataacttatttttatgagcttataatagtttttcataagatgattcaagtag 90  Q
    |||||||||||| |||||||||||||| |||||| ||||  ||||| | ||||| | ||||||||||    
T  1243062 tttttacacgagcttataacttattttcatgagcatatagaagtttctgataagttaattcaagtag 1243128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 43822515 - 43822588
Alignment:
Q  19 tgtcgtttttacacgagattataacttatttttatgagcttataatagtttttcataagatgattcaagtagct 92  Q
    |||| ||||||||| || ||||| |||||||| ||||| ||||| | |||||| ||||| | ||||||||||||    
T  43822515 tgtcatttttacacaagcttatagcttattttcatgagattatagtggtttttgataagctaattcaagtagct 43822588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 7125 times since January 2019
Visitors: 5774