View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0788_low_4 (Length: 437)
Name: NF0788_low_4
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0788_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 118 - 425
Target Start/End: Complemental strand, 23206465 - 23206158
Alignment:
| Q |
118 |
tgtggataaagagcaacgttgacagcagcaggtccatcaacttcctggcctctctttggtggatttggctgcaccgaaacaacatgtgttacaataacgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23206465 |
tgtggataaagagcaacgttgacagcagcaggtccatcaacttcctggcctctctttggtggatttggctgcaccgaaacaacatgtgtttcaataacga |
23206366 |
T |
|
| Q |
218 |
cgtctggtctctcacgcgtttgagtatcaacatccagaactcaacagaaataatcaaaaagagctttcaatctgctgccattacagctggtcccgatcgc |
317 |
Q |
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|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
23206365 |
cgcctggtctctcacgcgtttgagtatcaacatccagcactcaacagaaataatcaaaaagagctttcaatctgctgccattacagctggtcctgaacgc |
23206266 |
T |
|
| Q |
318 |
tggatttcatggaatagcagaaaatttaactgccacattctcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggaggattaattc |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23206265 |
tggatttcatggaatagcagaaaatttaactgccacattctcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggaggattaattc |
23206166 |
T |
|
| Q |
418 |
gcaacagc |
425 |
Q |
| |
|
|||||||| |
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|
| T |
23206165 |
gcaacagc |
23206158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 120 - 423
Target Start/End: Original strand, 23426054 - 23426357
Alignment:
| Q |
120 |
tggataaagagcaacgttgacagcagcaggtccatcaacttcctggcctctctttggtggatttggctgcaccgaaacaacatgtgttacaataacggcg |
219 |
Q |
| |
|
|||||||| ||||| |||||||||||| | || |||| ||| ||||| |||||||||||||||||||||||| | ||||||||||||| |||||||| | |
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| T |
23426054 |
tggataaaaagcaatgttgacagcagccgctcaatcatctttctggcttctctttggtggatttggctgcactgcaacaacatgtgtttcaataacgagg |
23426153 |
T |
|
| Q |
220 |
tctggtctctcacgcgtttgagtatcaacatccagaactcaacagaaataatcaaaaagagctttcaatctgctgccattacagctggtcccgatcgctg |
319 |
Q |
| |
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|||||||||||||||||||||| || | |||||| ||||||||||||| ||||| ||||| ||||| || |||||||||| |||||||| |||||||| |
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| T |
23426154 |
tctggtctctcacgcgtttgagcattagcatccataactcaacagaaacaatcactaagagttttcagtccactgccattactgctggtcctgatcgctg |
23426253 |
T |
|
| Q |
320 |
gatttcatggaatagcagaaaatttaactgccacattctcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggaggattaattcgc |
419 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| |
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| T |
23426254 |
gatttcatggaatagcagaaattataattgccacattctcaatgtagatggcagctgtcttggcactccaatacgtgccggttatggaggtttaatccgc |
23426353 |
T |
|
| Q |
420 |
aaca |
423 |
Q |
| |
|
|||| |
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|
| T |
23426354 |
aaca |
23426357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 120 - 424
Target Start/End: Complemental strand, 11587957 - 11587653
Alignment:
| Q |
120 |
tggataaagagcaacgttgacagcagcaggtccatcaacttcctggcctctctttggtggatttggctgcaccgaaacaacatgtgttacaataacggcg |
219 |
Q |
| |
|
|||||||| | |||||||||||||| | | || |||| ||| ||||| |||||||||||||||||||||||||| |||||| |||| | |||||||| | |
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|
| T |
11587957 |
tggataaaaaacaacgttgacagcaaccgttcaatcatctttctggcttctctttggtggatttggctgcaccgcaacaacttgtgcttcaataacgagg |
11587858 |
T |
|
| Q |
220 |
tctggtctctcacgcgtttgagtatcaacatccagaactcaacagaaataatcaaaaagagctttcaatctgctgccattacagctggtcccgatcgctg |
319 |
Q |
| |
|
| ||||||||||||||||||| |||| |||||| |||||| | |||| |||||||||||| ||||| || |||| |||| | |||||| |||||||||| |
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|
| T |
11587857 |
tatggtctctcacgcgtttgaacatcagcatccataactcagccgaaacaatcaaaaagagttttcagtccgctgtcattgctgctggttccgatcgctg |
11587758 |
T |
|
| Q |
320 |
gatttcatggaatagcagaaaatttaactgccacattctcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggaggattaattcgc |
419 |
Q |
| |
|
||||||||||||| || ||| | ||| |||||||| |||||||| |||||||||||||||||||||||||| || ||| |||||||||| ||||| ||| |
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|
| T |
11587757 |
aatttcatggaataacataaattataattgccacatcctcaatgtcgatggcagctgtcttggcactccaattcgtgccagttatggaggtttaatccgc |
11587658 |
T |
|
| Q |
420 |
aacag |
424 |
Q |
| |
|
||||| |
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|
| T |
11587657 |
aacag |
11587653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 48193773 - 48193829
Alignment:
| Q |
29 |
actttttatggtatacttttggattcaattcaaaatgaagtggccagccaattcacc |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48193773 |
actttttatggtatacttttggattcaattcaaaatgaagtggccagccaattcacc |
48193829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 120 - 425
Target Start/End: Complemental strand, 24892436 - 24892131
Alignment:
| Q |
120 |
tggataaagagcaacgttgacagcagcaggtccatcaacttcctggcctctctttggtggatttggctgcaccgaaacaacatgtgttacaataacggcg |
219 |
Q |
| |
|
|||||||| ||||| |||||||||||| | || ||| || ||||||||||| |||||||||||||||||||| ||||||||||||| ||| |||| | |
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| T |
24892436 |
tggataaaaagcaatgttgacagcagccgctcaatcttttttctggcctctctgtggtggatttggctgcaccgcaacaacatgtgtttcaacaacgagg |
24892337 |
T |
|
| Q |
220 |
tctggtctctcacgcgtttgagtatcaacatccagaactcaacagaaataatcaaaaagagctttcaatctgctgccattacagctggtcccgatcgctg |
319 |
Q |
| |
|
|||||||||||||||| ||||| || | |||||| ||||||||||||| ||||| |||||||||||| || || |||||||| ||||| | |||||||| |
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| T |
24892336 |
tctggtctctcacgcggttgagcattagcatccataactcaacagaaacaatcataaagagctttcagtccgcggccattactgctggcactgatcgctg |
24892237 |
T |
|
| Q |
320 |
gatttcatggaatagcagaaaatttaactgccacattctcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggaggattaattcgc |
419 |
Q |
| |
|
|||||| ||||| |||||||| | || |||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || |
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|
| T |
24892236 |
gatttcttggaacagcagaaattacaattgccacatcctcaatgtagatggcagctgtcttggcactccaatacgtgccggctatggaggtttaatctgc |
24892137 |
T |
|
| Q |
420 |
aacagc |
425 |
Q |
| |
|
|||||| |
|
|
| T |
24892136 |
aacagc |
24892131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 158 - 425
Target Start/End: Complemental strand, 24989221 - 24988954
Alignment:
| Q |
158 |
cttcctggcctctctttggtggatttggctgcaccgaaacaacatgtgttacaataacggcgtctggtctctcacgcgtttgagtatcaacatccagaac |
257 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||||||||||||| | ||| |||| || ||||| ||||||| ||||| ||| |||| | ||| |
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|
| T |
24989221 |
cttcctggcttctctttggtggagttggttgcaccgaaacaacatgtgcttcaacaacgatgtatggtccctcacgcatttgaaagtcagcatctataac |
24989122 |
T |
|
| Q |
258 |
tcaacagaaataatcaaaaagagctttcaatctgctgccattacagctggtcccgatcgctggatttcatggaatagcagaaaatttaactgccacattc |
357 |
Q |
| |
|
||| | ||| |||||||| | |||||| ||| || |||| | |||||| | ||||| |||||||||||||| |||||||| ||||| |||||||| | |
|
|
| T |
24989121 |
tcagccgaagccatcaaaaaaggttttcaaactgttgtcattgctgctggttcagatcgatggatttcatggaaaagcagaaattttaattgccacatcc |
24989022 |
T |
|
| Q |
358 |
tcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggaggattaattcgcaacagc |
425 |
Q |
| |
|
||||||| || ||||||||||||||||| |||| || || ||||||||||| ||||| ||||||||| |
|
|
| T |
24989021 |
tcaatgtcgacggcagctgtcttggcacaccaactcgtgctggttatggaggcttaatacgcaacagc |
24988954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 46056205 - 46056092
Alignment:
| Q |
312 |
gatcgctggatttcatggaatagcagaaaatttaactgccacattctcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggaggat |
411 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||||||||||||||| || | |||||||||||||| |||| || | ||||||||||| | |
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|
| T |
46056205 |
gatcggtggatttcatggaatagcagaaatttcaactgccacattctcaatgtcgacagaagctgtcttggcacaccaactcgtgttggttatggaggct |
46056106 |
T |
|
| Q |
412 |
taattcgcaacagc |
425 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
46056105 |
taatacgtaacagc |
46056092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 10102061 - 10102015
Alignment:
| Q |
345 |
aactgccacattctcaatgtagatggcagctgtcttggcactccaat |
391 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10102061 |
aactgccacattctcaatgtagatggcaactgccttggcactccaat |
10102015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 423
Target Start/End: Original strand, 50455796 - 50455866
Alignment:
| Q |
353 |
cattctcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggaggattaattcgcaaca |
423 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||||| || |||| ||||||| || | ||||||| |
|
|
| T |
50455796 |
cattctcaatgtcgatgggagctgtcttggcacgccaatccgagctggttttggaggaatactacgcaaca |
50455866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 40730514 - 40730576
Alignment:
| Q |
347 |
ctgccacattctcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggagg |
409 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
40730514 |
ctgccacatcctcaatgtagatggcagctgccttggaactccaatccgagccggttatggagg |
40730576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 425
Target Start/End: Original strand, 3883495 - 3883567
Alignment:
| Q |
353 |
cattctcaatgtagatggcagctgtcttggcactccaatccgcgccggttatggaggattaattcgcaacagc |
425 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| |||||||| || |||||||||||| | ||||||||||| |
|
|
| T |
3883495 |
cattctcaacgtcgatgggagctgtcttggcacaccaatccgagcgggttatggaggaattcttcgcaacagc |
3883567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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