View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0788_low_5 (Length: 419)

Name: NF0788_low_5
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0788_low_5
NF0788_low_5
[»] chr3 (3 HSPs)
chr3 (80-390)||(8102821-8103131)
chr3 (83-212)||(40146992-40147121)
chr3 (284-365)||(40146875-40146956)
[»] chr4 (7 HSPs)
chr4 (215-390)||(7606716-7606891)
chr4 (233-390)||(7637565-7637722)
chr4 (284-390)||(7629170-7629276)
chr4 (284-390)||(7615781-7615887)
chr4 (215-390)||(7655604-7655776)
chr4 (139-187)||(7637486-7637534)
chr4 (157-187)||(7606673-7606703)
[»] chr7 (2 HSPs)
chr7 (237-390)||(8935565-8935718)
chr7 (139-187)||(8910814-8910862)
[»] chr6 (1 HSPs)
chr6 (284-384)||(6501060-6501156)
[»] chr8 (1 HSPs)
chr8 (284-365)||(15190673-15190754)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 80 - 390
Target Start/End: Original strand, 8102821 - 8103131
Alignment:
Q  80 aggtgtgcaaaaagtgcttgaagggaagatattttgttcgtatccgtttctaagttggctttcaatttcaattgagagattttctcctttgtgaaatgaa 179  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102821 aggtgtgcaaaaagtgcttgaagggaagatattttgttcgtacccgtttctaagttggctttcaatttcaattgagagattttctcctttgtgaaatgaa 8102920  T
Q  180 ataacctaactgatgggttgagtttttcgttatttagtttttcgttattagatgatgaaaaactcaacccaccagattggttattttgtagcttcttagt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8102921 ataacctaactgatgggttgagtttttcgttatttagtttttcgttattagatgatgaaaaactcaacccatcagattggttattttgtagcttcttagt 8103020  T
Q  280 gaagggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttca 379  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  8103021 gaagggaaatcgtatgggacattgaataccatctggaaaccaacgttcaagtgttgagagtttggatgtttgattgcaacaaccaccacgtgagatttca 8103120  T
Q  380 gcccacgaatt 390  Q
    |||||||||||    
T  8103121 gcccacgaatt 8103131  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 40147121 - 40146992
Alignment:
Q  83 tgtgcaaaaagtgcttgaagggaagatattttgttcgtatccgtttctaagttggctttcaatttcaattgagagattttctcctttgtgaaatgaaata 182  Q
    |||| |||||||| ||| ||||| ||||||||||| ||| |  | || | ||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  40147121 tgtgtaaaaagtgattggagggatgatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatggaata 40147022  T
Q  183 acctaactgatgggttgagtttttcgttat 212  Q
    ||||  ||||||| ||||  ||||||||||    
T  40147021 acctctctgatggattgaacttttcgttat 40146992  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 40146956 - 40146875
Alignment:
Q  284 ggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccac 365  Q
    ||||||||||||||| |||||||||||  ||||||||| ||||| || |||  ||||||||||| |||||||||||||||||    
T  40146956 ggaaatcgtatgggatgttgaataccacttggaaaccaacgttctagcgttatgagtttggatacttgattgcaacaaccac 40146875  T

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Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 215 - 390
Target Start/End: Original strand, 7606716 - 7606891
Alignment:
Q  215 agtttttcgttattagatgatgaaaaactcaacccaccagattggttattttgtagcttcttagtgaagggaaatcgtatgggacgttgaataccatctg 314  Q
    |||||||| | |||||| ||||||||||||||| || || | || ||||||||| ||| | ||||||| ||||||||||||||| |||||||||||| ||    
T  7606716 agtttttcctcattagacgatgaaaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttg 7606815  T
Q  315 gaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaatt 390  Q
    ||||||| || || ||||||||| |||||||||||||||  | ||||| ||| ||||| ||||||||||| |||||    
T  7606816 gaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaatt 7606891  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 390
Target Start/End: Original strand, 7637565 - 7637722
Alignment:
Q  233 gatgaaaaactcaacccaccagattggttattttgtagcttcttagtgaagggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtg 332  Q
    |||||||||||||||| | |||| || | ||||||| ||| |  |||||| ||||||||||| || ||||||| ||||| ||||||||| || || ||||    
T  7637565 gatgaaaaactcaacctatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgttgaacaccatttggaaaccaacgctctagtg 7637664  T
Q  333 ttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaatt 390  Q
    ||||| |||| ||||||||||    ||||| || |||||| ||||||||||| |||||    
T  7637665 ttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaatt 7637722  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 390
Target Start/End: Original strand, 7629170 - 7629276
Alignment:
Q  284 ggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagccc 383  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||  ||||||  |||| ||||||||||    ||||| || |||||| ||||||||||    
T  7629170 ggaaatcgtatgggaagttgaataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtgagatttcagccc 7629269  T
Q  384 acgaatt 390  Q
    | |||||    
T  7629270 atgaatt 7629276  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 390
Target Start/End: Original strand, 7615781 - 7615887
Alignment:
Q  284 ggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagccc 383  Q
    ||||||||||||||  |||||| ||||| ||||||||| || || ||||||||| |||| ||||||||||    ||||| || |||||| ||||||||||    
T  7615781 ggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagccc 7615880  T
Q  384 acgaatt 390  Q
    | |||||    
T  7615881 atgaatt 7615887  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 390
Target Start/End: Complemental strand, 7655776 - 7655604
Alignment:
Q  215 agtttttcgttattagatgatgaaaaactcaacccaccagattggttattttgtagcttcttagtgaagggaaatcgtatgggacgttgaataccatctg 314  Q
    |||||||||| || ||| || |||||||| |||||| |||| || || |||||| |||   |||| || ||||||||||| || |||||||| |||| ||    
T  7655776 agtttttcgtcatcagaagacgaaaaacttaacccatcagagtgattcttttgtggctctatagttaaaggaaatcgtataggtcgttgaattccatttg 7655677  T
Q  315 gaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaatt 390  Q
    ||||||| || || || ||||||   || ||||||||||    |  || ||||||||| |||||||||||||||||    
T  7655676 gaaaccaacgctccagcgttggggagttagatatttgat---gatgacaaccacgtgacatttcagcccacgaatt 7655604  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 7637486 - 7637534
Alignment:
Q  139 tttcaatttcaattgagagattttctcctttgtgaaatgaaataaccta 187  Q
    |||| ||||||||||   |||||||||||||||||||||||||||||||    
T  7637486 tttcgatttcaattgtaggattttctcctttgtgaaatgaaataaccta 7637534  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 7606673 - 7606703
Alignment:
Q  157 gattttctcctttgtgaaatgaaataaccta 187  Q
    |||||||||||||||||||||||||||||||    
T  7606673 gattttctcctttgtgaaatgaaataaccta 7606703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 390
Target Start/End: Complemental strand, 8935718 - 8935565
Alignment:
Q  237 aaaaactcaacccaccagattggttattttgtagcttcttagtgaagggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgg 336  Q
    |||||||||||||| |||| || || |||||| ||| |  |||||| ||||||||||| || ||||||| |||||| |||||||| ||||| ||||||||    
T  8935718 aaaaactcaacccatcagagtgattcttttgttgctccaaagtgaaaggaaatcgtattggccgttgaacaccatccggaaaccaacgttctagtgttgg 8935619  T
Q  337 gagtttggatatttgattgcaacaaccaccacgtgaaatttcagcccacgaatt 390  Q
      |||| ||||||||||    ||||| || |||||| ||||||||||| |||||    
T  8935618 aggtttagatatttgatgatgacaacaactacgtgagatttcagcccaagaatt 8935565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 8910862 - 8910814
Alignment:
Q  139 tttcaatttcaattgagagattttctcctttgtgaaatgaaataaccta 187  Q
    |||| ||||||||||   |||||||||||||||||||||||||||||||    
T  8910862 tttcgatttcaattgtaggattttctcctttgtgaaatgaaataaccta 8910814  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 6501060 - 6501156
Alignment:
Q  284 ggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccaccacgtgaaatttcagccc 383  Q
    ||||||||||||| ||| |||||| ||| ||||||| | ||||| |||| |||||||||||||||||||||   ||||| ||||||||||||||||||||    
T  6501060 ggaaatcgtatggaacgctgaatatcatttggaaacaa-cgttctagtgatgggagtttggatatttgatt---acaacaaccacgtgaaatttcagccc 6501155  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 15190754 - 15190673
Alignment:
Q  284 ggaaatcgtatgggacgttgaataccatctggaaaccatcgttcaagtgttgggagtttggatatttgattgcaacaaccac 365  Q
    ||||||||||||||||||||||| |||| ||||||  | ||||||||||||||  ||   |||||||||| |||| ||||||    
T  15190754 ggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtacagatatttgatggcaagaaccac 15190673  T

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