View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0788_low_7 (Length: 411)
Name: NF0788_low_7
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0788_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 65 - 355
Target Start/End: Original strand, 46873629 - 46873919
Alignment:
| Q |
65 |
ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgactattat |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46873629 |
ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggtggactttgtgctagttggcatatgctactgtgactattat |
46873728 |
T |
|
| Q |
165 |
acgatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcac |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46873729 |
acgatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcac |
46873828 |
T |
|
| Q |
265 |
aatattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgctctgcaatagctccaatgcagccgctatttaacaa |
355 |
Q |
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| T |
46873829 |
aatattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgctctgcaatagctccaatgcagccgctatttaacaa |
46873919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 46890979 - 46891117
Alignment:
| Q |
1 |
ttgtctctttgctttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcaaatttct |
100 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46890979 |
ttgtccctttgccttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcaaatttct |
46891078 |
T |
|
| Q |
101 |
tccataattaagccgtggcatggcggactttgtgctagt |
139 |
Q |
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|||||| | || ||||||||||||||||||||||||| |
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| T |
46891079 |
gccataaatgggctgtggcatggcggactttgtgctagt |
46891117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 46891255 - 46891396
Alignment:
| Q |
182 |
acattgtgttgttaattgcggttcgcggaaaaatatgct-agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaa |
280 |
Q |
| |
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||||||||||||||||||| ||| |||||| ||| || | ||||| || | | |||| ||||||||| |||||||||||||||||||||||| |||||| |
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| T |
46891255 |
acattgtgttgttaattgcagtttgcggaataatgtggttagttccaaatatgttctgtaatagtgctatagccgctatttcacaatattttgtactaaa |
46891354 |
T |
|
| Q |
281 |
tgacttttcg-cggggcattagcgagttgttcaaatcccgct |
321 |
Q |
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| | ||| | |||||| ||| || |||||||||||||||| |
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| T |
46891355 |
taaagtttggtgggggcaatagtgatttgttcaaatcccgct |
46891396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 18968369 - 18968310
Alignment:
| Q |
222 |
gttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaat |
281 |
Q |
| |
|
||||||||| |||| |||||||||| | |||||||||||| |||| |||||| ||||||| |
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| T |
18968369 |
gttcaaattacgctatgcaatagtgttatagccgctatttgacaacattttgtactaaat |
18968310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Complemental strand, 35522131 - 35522102
Alignment:
| Q |
252 |
gccgctatttcacaatattttgcactaaat |
281 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35522131 |
gccgctatttcacaatattttgcactaaat |
35522102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 48232215 - 48232114
Alignment:
| Q |
65 |
ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgactattat |
164 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | | || | | |||||||||||||||||||||||| |||||| |||| |||||||||| |
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| T |
48232215 |
ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgactattat |
48232116 |
T |
|
| Q |
165 |
ac |
166 |
Q |
| |
|
|| |
|
|
| T |
48232115 |
ac |
48232114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 48237255 - 48237154
Alignment:
| Q |
65 |
ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgactattat |
164 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | | || | | |||||||||||||||||||||||| |||||| |||| |||||||||| |
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|
| T |
48237255 |
ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgactattat |
48237156 |
T |
|
| Q |
165 |
ac |
166 |
Q |
| |
|
|| |
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|
| T |
48237155 |
ac |
48237154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 26238437 - 26238482
Alignment:
| Q |
236 |
ctgcaatagtgctttagccgctatttcacaatattttgcactaaat |
281 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
26238437 |
ctgcaatagtgctatagccgctatttggcaatattttgtactaaat |
26238482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 28727003 - 28726955
Alignment:
| Q |
222 |
gttcaaattccgctctgcaatagtgctttagccgctatttcacaatatt |
270 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| ||||||||||||||| |
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| T |
28727003 |
gttcaaattccgctatgcaacagtgccatagccactatttcacaatatt |
28726955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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