View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0788_low_8 (Length: 403)

Name: NF0788_low_8
Description: NF0788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0788_low_8
NF0788_low_8
[»] chr8 (7 HSPs)
chr8 (38-258)||(34844632-34844852)
chr8 (152-206)||(23402091-23402145)
chr8 (156-205)||(36408538-36408587)
chr8 (152-205)||(2729327-2729380)
chr8 (149-205)||(4403988-4404044)
chr8 (200-258)||(17838924-17838981)
chr8 (190-238)||(5643407-5643455)
[»] chr4 (15 HSPs)
chr4 (153-258)||(50720424-50720529)
chr4 (152-258)||(6211977-6212082)
chr4 (152-258)||(17554979-17555084)
chr4 (152-258)||(5517443-5517548)
chr4 (152-258)||(12680141-12680246)
chr4 (152-238)||(49908750-49908836)
chr4 (149-205)||(7769308-7769364)
chr4 (152-205)||(6690366-6690419)
chr4 (149-205)||(43143715-43143771)
chr4 (148-205)||(48129949-48130002)
chr4 (187-238)||(37236601-37236652)
chr4 (213-258)||(2178072-2178117)
chr4 (152-205)||(3293027-3293080)
chr4 (152-205)||(10353015-10353068)
chr4 (152-205)||(30216873-30216926)
[»] chr6 (5 HSPs)
chr6 (152-258)||(34385467-34385572)
chr6 (152-238)||(13647000-13647086)
chr6 (152-258)||(21149280-21149385)
chr6 (155-238)||(2753336-2753419)
chr6 (152-205)||(28996713-28996766)
[»] chr5 (11 HSPs)
chr5 (152-258)||(15497887-15497993)
chr5 (143-205)||(31680341-31680403)
chr5 (152-205)||(202622-202675)
chr5 (148-205)||(37254620-37254677)
chr5 (190-258)||(2985389-2985456)
chr5 (187-258)||(4307174-4307244)
chr5 (187-258)||(15917043-15917113)
chr5 (152-205)||(17332682-17332735)
chr5 (182-225)||(14316671-14316714)
chr5 (147-205)||(12278991-12279049)
chr5 (152-205)||(31501847-31501900)
[»] chr3 (13 HSPs)
chr3 (152-258)||(6890981-6891086)
chr3 (182-258)||(51818285-51818360)
chr3 (152-205)||(6931025-6931078)
chr3 (152-205)||(45182964-45183017)
chr3 (191-258)||(21433945-21434011)
chr3 (148-202)||(6503703-6503757)
chr3 (185-258)||(19269639-19269711)
chr3 (152-205)||(45335858-45335911)
chr3 (187-258)||(48757832-48757902)
chr3 (189-238)||(19237199-19237248)
chr3 (152-205)||(33040936-33040989)
chr3 (152-205)||(35514249-35514302)
chr3 (149-205)||(11018343-11018399)
[»] chr1 (3 HSPs)
chr1 (152-258)||(31866960-31867065)
chr1 (152-258)||(44352562-44352667)
chr1 (148-205)||(35907531-35907588)
[»] chr7 (8 HSPs)
chr7 (153-224)||(37966595-37966666)
chr7 (149-205)||(34389187-34389243)
chr7 (146-205)||(33685541-33685600)
chr7 (187-258)||(38826520-38826590)
chr7 (188-238)||(22937966-22938016)
chr7 (152-205)||(8867862-8867915)
chr7 (152-201)||(7002708-7002757)
chr7 (152-201)||(7048579-7048628)
[»] chr2 (5 HSPs)
chr2 (152-206)||(8147334-8147388)
chr2 (152-205)||(45418566-45418619)
chr2 (152-205)||(44084734-44084787)
chr2 (213-258)||(9386218-9386263)
chr2 (206-258)||(9386340-9386392)
[»] scaffold0154 (1 HSPs)
scaffold0154 (152-205)||(31463-31516)
[»] scaffold0057 (1 HSPs)
scaffold0057 (185-258)||(64111-64181)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 38 - 258
Target Start/End: Original strand, 34844632 - 34844852
Alignment:
Q  38 atccacgttcaataaaaatacaaatataaaaacttgaactcagattgtaagatattgatcgaacaactatgaatacaaggaatccttgtccgcaacgaag 137  Q
    |||||||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  34844632 atccacgttcaataaaaatacaaatataaaaatttgaacttatatcgtaagatattgatcgaacaactatgaatacagagaatccttgtccgcaacgaag 34844731  T
Q  138 caaacttaaagcatgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtac 237  Q
    ||||||||||| |||||||||||  |||| ||||||||  ||  ||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  34844732 caaacttaaagtatgggcggttttgccgctcggcgaccctaggcggtcgcctgggctcgatcgataatcagtggtggatcttccttaggacccatggtac 34844831  T
Q  238 ccccaaagtttctatatatat 258  Q
    |||||||||||||||||||||    
T  34844832 ccccaaagtttctatatatat 34844852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 23402091 - 23402145
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatc 206  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||||||||||    
T  23402091 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatc 23402145  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 36408538 - 36408587
Alignment:
Q  156 ggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  36408538 ggtttcaccgcccggcgacctcgggcggtcgcccgggctcgatcgataat 36408587  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 2729380 - 2729327
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |  || |||||||||||||||||||||    
T  2729380 gggcggtttcaccgcccggcgaccccgggcggacgcccgggctcgatcgataat 2729327  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 4403988 - 4404044
Alignment:
Q  149 catgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    ||||| ||||||||| | ||||||||| |||  ||||||||||||||||||||||||    
T  4403988 catggacggtttcactggccggcgaccccaggcggtcgcccgggctcgatcgataat 4404044  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 17838924 - 17838981
Alignment:
Q  200 gataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    |||||||| ||| ||||||||||||||| |||||||| || ||| ||||||||||||||    
T  17838924 gataatcagtggcggatcttccttgggacccatggta-ccgcaatgtttctatatatat 17838981  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 5643455 - 5643407
Alignment:
Q  190 gggctcgatcgataatcaatggtggatcttccttgggatccatggtacc 238  Q
    |||||||||||||||||| ||| ||||||||||| | | ||||||||||    
T  5643455 gggctcgatcgataatcagtggcggatcttccttagaacccatggtacc 5643407  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 50720529 - 50720424
Alignment:
Q  153 ggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctat 252  Q
    ||||||||||||||||||||||||| |  |||||||||||||| ||| ||||| | |||||||| ||| |||||||||||||||| ||||||||||||||    
T  50720529 ggcggtttcaccgcccggcgacctcgggcggtcgcccgggctcaatcaataattagtggtggatattcgttgggatccatggtactcccaaagtttctat 50720430  T
Q  253 atatat 258  Q
    ||||||    
T  50720429 atatat 50720424  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 6212082 - 6211977
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    |||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||| || ||| |||||||    
T  6212082 gggcggtttcaccgtccggcgacctcgggcggtcgcccgagctcgatcgataatcaatggcggatcttccttgggacccacggta-ccacaatgtttcta 6211984  T
Q  252 tatatat 258  Q
    |||||||    
T  6211983 tatatat 6211977  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 17554979 - 17555084
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    |||||||||||||| ||| ||||| | | ||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||| |||||| |||||||    
T  17554979 gggcggtttcaccgtccgacgaccccgggtggtcgcccgggctcgatcgataatcagtggcggatctaccttgggacccatggta-ccccaatgtttcta 17555077  T
Q  252 tatatat 258  Q
    |||||||    
T  17555078 tatatat 17555084  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 5517548 - 5517443
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    |||||||||||||||||||||||| | |  ||||||| |||||||||||||||| ||||||||||||||||| | | |||||||| || ||| |||||||    
T  5517548 gggcggtttcaccgcccggcgaccccgggcggtcgcctgggctcgatcgataattaatggtggatcttccttagaacccatggta-ccacaatgtttcta 5517450  T
Q  252 tatatat 258  Q
    |||||||    
T  5517449 tatatat 5517443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 12680246 - 12680141
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    ||||||||||||||||| || ||| |||  ||| |||||||||||||||||||||| ||| | ||||||||||||| |||||||| ||||||  ||||||    
T  12680246 gggcggtttcaccgcccagcaaccccaggcggtggcccgggctcgatcgataatcagtggcgtatcttccttgggacccatggta-ccccaatatttcta 12680148  T
Q  252 tatatat 258  Q
    |||||||    
T  12680147 tatatat 12680141  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 49908836 - 49908750
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacc 238  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||||||||| ||||| ||||||||||| | | ||||||||||    
T  49908836 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataattaatggcggatcttccttagaacccatggtacc 49908750  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 7769308 - 7769364
Alignment:
Q  149 catgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    ||||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||    
T  7769308 catgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataat 7769364  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 6690419 - 6690366
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |  ||||||||||||||||||||||||    
T  6690419 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 6690366  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 43143771 - 43143715
Alignment:
Q  149 catgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    ||||||||||||||||| ||| ||||| | |  ||||||||||||||||||||||||    
T  43143771 catgggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataat 43143715  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 48129949 - 48130002
Alignment:
Q  148 gcatgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    ||||||||||||| ||||||||||||||||    ||||| ||||||||||||||||||    
T  48129949 gcatgggcggtttaaccgcccggcgacctc----ggtcgaccgggctcgatcgataat 48130002  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 37236652 - 37236601
Alignment:
Q  187 cccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacc 238  Q
    ||||||||||||||||||| ||||| ||||||||||| | | ||||||||||    
T  37236652 cccgggctcgatcgataattaatggcggatcttccttagaacccatggtacc 37236601  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 2178117 - 2178072
Alignment:
Q  213 ggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    |||||||||  ||||||||||||||||||| | |||||||||||||    
T  2178117 ggatcttcccagggatccatggtacccccagattttctatatatat 2178072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 3293080 - 3293027
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    ||||||||||||||||| | |||| | |  ||||||||||||||||||||||||    
T  3293080 gggcggtttcaccgcccagtgaccccgggcggtcgcccgggctcgatcgataat 3293027  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 10353068 - 10353015
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||| ||||||||| | |  |||||||||||||| |||||||||    
T  10353068 gggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataat 10353015  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 30216926 - 30216873
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||| ||||||| ||||||||| | |  ||||||||||||||||||||||||    
T  30216926 gggcggattcaccgtccggcgaccccgggcggtcgcccgggctcgatcgataat 30216873  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 34385572 - 34385467
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    |||||||||||||||||||||||| | |  ||| |||| ||||||||||||||||| |||||||||| |||||| | |||||||| || ||| |||||||    
T  34385572 gggcggtttcaccgcccggcgaccccgggcggttgccctggctcgatcgataatcagtggtggatctaccttggaacccatggta-ccgcaatgtttcta 34385474  T
Q  252 tatatat 258  Q
    |||||||    
T  34385473 tatatat 34385467  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 13647000 - 13647086
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacc 238  Q
    ||||||||||||| |||||||||| | |  |||||||||||||||||||||||||| ||| ||||||||||| | | ||||||||||    
T  13647000 gggcggtttcaccacccggcgaccccgggcggtcgcccgggctcgatcgataatcagtggcggatcttccttagaacccatggtacc 13647086  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 21149385 - 21149280
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    |||| |||||||||||||| |||||| |  |||||| |||||| |||||||||| | ||| |||||| ||||||||||||||||| || ||| |||||||    
T  21149385 gggcagtttcaccgcccggtgacctcgggcggtcgctcgggcttgatcgataattagtggcggatctaccttgggatccatggta-cctcaatgtttcta 21149287  T
Q  252 tatatat 258  Q
    |||||||    
T  21149286 tatatat 21149280  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 2753336 - 2753419
Alignment:
Q  155 cggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacc 238  Q
    ||||||||||| |||||||||  ||  ||||||||| |||| ||||||||| | ||| ||||||||||||||| ||||| ||||    
T  2753336 cggtttcaccgtccggcgaccctaggcggtcgcccgagctcaatcgataattagtggcggatcttccttgggagccatgatacc 2753419  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 28996713 - 28996766
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |  ||||||||| ||||||||||||||    
T  28996713 gggcggtttcaccgcccggcgaccccgggcggtcgcccgagctcgatcgataat 28996766  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 15497993 - 15497887
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    |||||||||||||| |||||||  ||||  ||||| | || ||||||||||||||| ||||||||||||||||||| ||||||   |||||| |||||||    
T  15497993 gggcggtttcaccgtccggcgaattcagacggtcgtctggactcgatcgataatcagtggtggatcttccttgggacccatgggtaccccaatgtttcta 15497894  T
Q  252 tatatat 258  Q
    |||||||    
T  15497893 tatatat 15497887  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 31680341 - 31680403
Alignment:
Q  143 ttaaagcatgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||| ||| |||||||||||||||||||||||| | |  ||||||||||||||||||||||||    
T  31680341 ttaaggcaggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 31680403  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 202622 - 202675
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||| |||||  || |||||||||||||||||||||||||    
T  202622 gggcggtttcaccgcccgacgaccctaggtggtcgcccgggctcgatcgataat 202675  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 37254620 - 37254677
Alignment:
Q  148 gcatgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    ||||||||||||||||||| |||||||| |||  |||||||| |||||||||||||||    
T  37254620 gcatgggcggtttcaccgctcggcgaccccaggcggtcgcccaggctcgatcgataat 37254677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 2985389 - 2985456
Alignment:
Q  190 gggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    |||||||| ||||||||| ||| ||||||||||||||| |||||||| || ||| ||||||||||||||    
T  2985389 gggctcgaccgataatcagtggcggatcttccttgggagccatggta-ccacaaggtttctatatatat 2985456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 4307244 - 4307174
Alignment:
Q  187 cccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    ||||||||||||||||||| ||||| ||||||||||| | | |||||||| || ||| ||||||||||||||    
T  4307244 cccgggctcgatcgataattaatggcggatcttccttagaacccatggta-ccgcaatgtttctatatatat 4307174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 15917043 - 15917113
Alignment:
Q  187 cccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    ||||||||||||||||||||| ||| || |||||||||| | |||||||| || ||| ||||||||||||||    
T  15917043 cccgggctcgatcgataatcagtggcgggtcttccttggaacccatggta-ccgcaatgtttctatatatat 15917113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 17332735 - 17332682
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |  | ||||||||||||||||||||||    
T  17332735 gggcggtttcaccgcccggcgaccccgggcgttcgcccgggctcgatcgataat 17332682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 14316671 - 14316714
Alignment:
Q  182 ggtcgcccgggctcgatcgataatcaatggtggatcttccttgg 225  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||    
T  14316671 ggtcgcccaggctcgatcgataatcagtggcggatcttccttgg 14316714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 12279049 - 12278991
Alignment:
Q  147 agcatgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||| |||||||||||||||||||||| | | |  |||||||||| |||||||||||||    
T  12279049 agcaggggcggtttcaccgcccggcgatcccgggcggtcgcccggactcgatcgataat 12278991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 31501900 - 31501847
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |  | | ||||||||||||||||||||    
T  31501900 gggcggtttcaccgcccggcgaccccgggcgattgcccgggctcgatcgataat 31501847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 6890981 - 6891086
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    |||||||||||||||||||||||  | |  |||||||||||||||||||||||| ||||| ||||||||||| | | |||||||| || ||| |||||||    
T  6890981 gggcggtttcaccgcccggcgacaccgggcggtcgcccgggctcgatcgataattaatggcggatcttccttagaacccatggta-ccgcaatgtttcta 6891079  T
Q  252 tatatat 258  Q
    |||||||    
T  6891080 tatatat 6891086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 51818360 - 51818285
Alignment:
Q  182 ggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    |||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||| || ||| ||||||||||||||    
T  51818360 ggtcgcccggactcgatcgataatcagtggcggatcttctttgggatccatggta-ccgcaatgtttctatatatat 51818285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 6931078 - 6931025
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |  ||||||||||||||||||||||||    
T  6931078 gggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatcgataat 6931025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 45182964 - 45183017
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |  ||||||||||||||||||||||||    
T  45182964 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 45183017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 21433945 - 21434011
Alignment:
Q  191 ggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    ||||||||||||||||| ||| ||||||||||||| | |||||||| || ||| ||||||||||||||    
T  21433945 ggctcgatcgataatcagtggcggatcttccttggaacccatggta-ccgcaatgtttctatatatat 21434011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 6503757 - 6503703
Alignment:
Q  148 gcatgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgat 202  Q
    |||||||||||||||||| ||||||||| | |  |||||||||||||||||||||    
T  6503757 gcatgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgat 6503703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 19269711 - 19269639
Alignment:
Q  185 cgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    ||||||||||||||||||||| ||||| ||||||| ||| | | |||||||| || ||| ||||||||||||||    
T  19269711 cgcccgggctcgatcgataattaatggcggatctttcttagaacccatggta-ccgcaatgtttctatatatat 19269639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 45335858 - 45335911
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||||| |  |||||||||| ||| |||||||||    
T  45335858 gggcggtttcaccgcccggcgacctcgggcggtcgcccggactcaatcgataat 45335911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 48757902 - 48757832
Alignment:
Q  187 cccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    ||||||||| ||||||||| ||||| ||||||||||| | | |||||||| || ||| ||||||||||||||    
T  48757902 cccgggctcaatcgataattaatggcggatcttccttagaacccatggta-ccgcaatgtttctatatatat 48757832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 19237199 - 19237248
Alignment:
Q  189 cgggctcgatcgataatcaatggtggatcttccttgggatccatggtacc 238  Q
    |||| |||||||||||||| ||| ||||||||||||| | ||||||||||    
T  19237199 cgggatcgatcgataatcagtggcggatcttccttggaagccatggtacc 19237248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 33040936 - 33040989
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |  |||||| |||||||||| ||||||    
T  33040936 gggcggtttcaccgcccggcgaccccgggcggtcgctcgggctcgattgataat 33040989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 35514249 - 35514302
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||| ||||||||||||||||||| | |  ||||| ||||||||||||||||||    
T  35514249 gggcagtttcaccgcccggcgaccccggacggtcgtccgggctcgatcgataat 35514302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 11018399 - 11018343
Alignment:
Q  149 catgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    ||||||||||||||||| ||||||||  | |  |||||||| |||||||||||||||    
T  11018399 catgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataat 11018343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 31866960 - 31867065
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    |||||||||||||||||||||||| | |  ||||||||||| |||| ||||||| ||||| ||||||||||| | |||||||||| || ||| |||||||    
T  31866960 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggttcgaccgataattaatggcggatcttccttagaatccatggta-ccgcaatgtttcta 31867058  T
Q  252 tatatat 258  Q
    |||||||    
T  31867059 tatatat 31867065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 44352667 - 44352562
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttcta 251  Q
    |||||||||||||  ||||||||| | |  |||||||||||||||||||||||||| ||| |||||| |||||||| |||| ||| |||||| |||||||    
T  44352667 gggcggtttcaccatccggcgaccccgggaggtcgcccgggctcgatcgataatcagtggcggatctaccttgggacccatcgta-ccccaaggtttcta 44352569  T
Q  252 tatatat 258  Q
    |||||||    
T  44352568 tatatat 44352562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 35907531 - 35907588
Alignment:
Q  148 gcatgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||| ||||||||||    
T  35907531 gcatgggcggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataat 35907588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 37966666 - 37966595
Alignment:
Q  153 ggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatcaatggtggatcttccttg 224  Q
    |||||||||||||||||||||||||||  ||||| ||| |||||||||||||| | ||||||||||||||||    
T  37966666 ggcggtttcaccgcccggcgacctcaggcggtcgtccgagctcgatcgataatgagtggtggatcttccttg 37966595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 34389243 - 34389187
Alignment:
Q  149 catgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||| |||||||||||||||||| | |  ||||||||||||||||||||||||    
T  34389243 catgggcgatttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 34389187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 33685541 - 33685600
Alignment:
Q  146 aagcatgggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    ||||| |||||||||||||||||||||||| |||   ||||| |||||||||||||||||    
T  33685541 aagcaggggcggtttcaccgcccggcgaccccaggcagtcgctcgggctcgatcgataat 33685600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 38826590 - 38826520
Alignment:
Q  187 cccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    ||||||||||||||||||| ||||| ||||||||||| | | |||||||| || ||| ||||||||||||||    
T  38826590 cccgggctcgatcgataattaatggcggatcttccttagaacccatggta-ccgcaatgtttctatatatat 38826520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 22938016 - 22937966
Alignment:
Q  188 ccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacc 238  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||    
T  22938016 ccgggctcgatcgataatcagtgacggatcttccttgggacccatggtacc 22937966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 8867915 - 8867862
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||| ||||||||||||||||||| | |  ||||||||||||||||||||||||    
T  8867915 gggcagtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 8867862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 7002708 - 7002757
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcga 201  Q
    |||||||||||||||||||||||| |    ||||||||||||||||||||    
T  7002708 gggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatcga 7002757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 7048579 - 7048628
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcga 201  Q
    |||||||||||||||||||||||| |    ||||||||||||||||||||    
T  7048579 gggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatcga 7048628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 8147334 - 8147388
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataatc 206  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||||||||||    
T  8147334 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatc 8147388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 45418566 - 45418619
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |  ||||||||||||||||||||||||    
T  45418566 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 45418619  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 44084787 - 44084734
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    |||||||||||||||||||||||| | |   |||||||||||||||||||||||    
T  44084787 gggcggtttcaccgcccggcgaccccgggcagtcgcccgggctcgatcgataat 44084734  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 9386218 - 9386263
Alignment:
Q  213 ggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    ||||||||||||||| ||||| || |||||| ||||||||||||||    
T  9386218 ggatcttccttgggacccatgatatccccaatgtttctatatatat 9386263  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 9386340 - 9386392
Alignment:
Q  206 caatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    |||||| ||||||||||| ||| ||||||||||||||| ||||  ||||||||    
T  9386340 caatggcggatcttcctttggacccatggtacccccaaggttttaatatatat 9386392  T

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Target: scaffold0154 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 31463 - 31516
Alignment:
Q  152 gggcggtttcaccgcccggcgacctcagttggtcgcccgggctcgatcgataat 205  Q
    ||||||||||| |||||||||||| |||  ||||||||||||||||||||||||    
T  31463 gggcggtttcatcgcccggcgaccccagacggtcgcccgggctcgatcgataat 31516  T

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Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 64181 - 64111
Alignment:
Q  185 cgcccgggctcgatcgataatcaatggtggatcttccttgggatccatggtacccccaaagtttctatatatat 258  Q
    ||||||||||||| ||||||||| ||  ||||||||||||| ||||||||||   |||| ||||||||||||||    
T  64181 cgcccgggctcgaccgataatcagtgacggatcttccttggaatccatggta---ccaatgtttctatatatat 64111  T

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